Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 21525 | 0.66 | 0.77327 |
Target: 5'- gGGGcUACUgCugggaggGCCGCgGCUGcGGUGGAc -3' miRNA: 3'- -UCC-AUGAgG-------UGGCGgCGACuCCGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 108147 | 0.68 | 0.660573 |
Target: 5'- uGGcACuUCCG-CGUgGCUGGGGCGGGu -3' miRNA: 3'- uCCaUG-AGGUgGCGgCGACUCCGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 82989 | 0.68 | 0.660573 |
Target: 5'- gAGGgACcUCAUCGCCaggggGCUgGAGGCGGAg -3' miRNA: 3'- -UCCaUGaGGUGGCGG-----CGA-CUCCGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 101842 | 0.68 | 0.660573 |
Target: 5'- cAGGUGCUCCagcaggcgACCGCCuauccaGCcuccgUGcAGGCGGGc -3' miRNA: 3'- -UCCAUGAGG--------UGGCGG------CG-----AC-UCCGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 138154 | 0.67 | 0.68008 |
Target: 5'- aAGGU-CUUUACC-CUGCUGAaGGCGGc -3' miRNA: 3'- -UCCAuGAGGUGGcGGCGACU-CCGCCu -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 109067 | 0.67 | 0.718596 |
Target: 5'- --cUACUCCAuCUGCCGCUccGuGCGGAg -3' miRNA: 3'- uccAUGAGGU-GGCGGCGAcuC-CGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 111504 | 0.66 | 0.728075 |
Target: 5'- uGGUGauccCCGCCGCCGCgcgcacGGgGGAg -3' miRNA: 3'- uCCAUga--GGUGGCGGCGacu---CCgCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 91141 | 0.66 | 0.737478 |
Target: 5'- uGGGUcCUCC-CgGCCGCgGGGGCugcugcGGAu -3' miRNA: 3'- -UCCAuGAGGuGgCGGCGaCUCCG------CCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 36652 | 0.66 | 0.765149 |
Target: 5'- aGGGUcuuCUCCugC-CUGCUGgacguggccGGGCGGGa -3' miRNA: 3'- -UCCAu--GAGGugGcGGCGAC---------UCCGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 182273 | 0.68 | 0.650784 |
Target: 5'- cGGUugUUgGCCGCUcgGCUGGuuGGUGGGu -3' miRNA: 3'- uCCAugAGgUGGCGG--CGACU--CCGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 15566 | 0.68 | 0.650784 |
Target: 5'- cGGUugUUgGCCGCUcgGCUGGuuGGUGGGu -3' miRNA: 3'- uCCAugAGgUGGCGG--CGACU--CCGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 47952 | 0.68 | 0.640982 |
Target: 5'- uGGGUGCguggCCAUCG-CGCUGuGGCuGAu -3' miRNA: 3'- -UCCAUGa---GGUGGCgGCGACuCCGcCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 89469 | 0.73 | 0.361217 |
Target: 5'- gGGGUcCUgCGCUggGCCGCcGAGGCGGGg -3' miRNA: 3'- -UCCAuGAgGUGG--CGGCGaCUCCGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 48912 | 0.71 | 0.442979 |
Target: 5'- gAGGUcACUcCCGCCGCC-CUGAcGGUGGu -3' miRNA: 3'- -UCCA-UGA-GGUGGCGGcGACU-CCGCCu -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 114919 | 0.71 | 0.442979 |
Target: 5'- cGGGUugccCUCCACCGgC-UUGAGGUGGAc -3' miRNA: 3'- -UCCAu---GAGGUGGCgGcGACUCCGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 30909 | 0.69 | 0.572567 |
Target: 5'- uGGaGCUCgGCCGCgGaCaGGGGCGGGg -3' miRNA: 3'- uCCaUGAGgUGGCGgC-GaCUCCGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 136060 | 0.69 | 0.582273 |
Target: 5'- gAGaGUACUCCcccagccccGCgGCCGCcaUGAaGGCGGGg -3' miRNA: 3'- -UC-CAUGAGG---------UGgCGGCG--ACU-CCGCCU- -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 30514 | 0.68 | 0.611564 |
Target: 5'- cGGUGC-CCugCGCguccugcuuCGCgGAGGCGGc -3' miRNA: 3'- uCCAUGaGGugGCG---------GCGaCUCCGCCu -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 53042 | 0.68 | 0.611564 |
Target: 5'- gGGGUAuuuCUCCccaaaaugACgGCCGC-GAGGCGGu -3' miRNA: 3'- -UCCAU---GAGG--------UGgCGGCGaCUCCGCCu -5' |
|||||||
3603 | 5' | -60.7 | NC_001650.1 | + | 79089 | 0.68 | 0.631173 |
Target: 5'- cGGGccugGCUCCgggcGCgGCCGCUcggcGGGCGGGa -3' miRNA: 3'- -UCCa---UGAGG----UGgCGGCGAc---UCCGCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home