miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3603 5' -60.7 NC_001650.1 + 15566 0.68 0.650784
Target:  5'- cGGUugUUgGCCGCUcgGCUGGuuGGUGGGu -3'
miRNA:   3'- uCCAugAGgUGGCGG--CGACU--CCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 21525 0.66 0.77327
Target:  5'- gGGGcUACUgCugggaggGCCGCgGCUGcGGUGGAc -3'
miRNA:   3'- -UCC-AUGAgG-------UGGCGgCGACuCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 23958 0.66 0.756023
Target:  5'- cGGGU-CUCCGCCccccgcgcGCCGC-GAGGacgcgcaGGAg -3'
miRNA:   3'- -UCCAuGAGGUGG--------CGGCGaCUCCg------CCU- -5'
3603 5' -60.7 NC_001650.1 + 24420 1.08 0.00145
Target:  5'- gAGGUACUCCACCGCCGCUGAGGCGGAg -3'
miRNA:   3'- -UCCAUGAGGUGGCGGCGACUCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 26265 0.7 0.543704
Target:  5'- cGGcGCUCagGCCGCCGCUGuAGGCc-- -3'
miRNA:   3'- uCCaUGAGg-UGGCGGCGAC-UCCGccu -5'
3603 5' -60.7 NC_001650.1 + 30514 0.68 0.611564
Target:  5'- cGGUGC-CCugCGCguccugcuuCGCgGAGGCGGc -3'
miRNA:   3'- uCCAUGaGGugGCG---------GCGaCUCCGCCu -5'
3603 5' -60.7 NC_001650.1 + 30909 0.69 0.572567
Target:  5'- uGGaGCUCgGCCGCgGaCaGGGGCGGGg -3'
miRNA:   3'- uCCaUGAGgUGGCGgC-GaCUCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 35319 0.67 0.68008
Target:  5'- uGGUAUauUCCuugguCgGCCGCgagGGGGCGGc -3'
miRNA:   3'- uCCAUG--AGGu----GgCGGCGa--CUCCGCCu -5'
3603 5' -60.7 NC_001650.1 + 36652 0.66 0.765149
Target:  5'- aGGGUcuuCUCCugC-CUGCUGgacguggccGGGCGGGa -3'
miRNA:   3'- -UCCAu--GAGGugGcGGCGAC---------UCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 47952 0.68 0.640982
Target:  5'- uGGGUGCguggCCAUCG-CGCUGuGGCuGAu -3'
miRNA:   3'- -UCCAUGa---GGUGGCgGCGACuCCGcCU- -5'
3603 5' -60.7 NC_001650.1 + 48912 0.71 0.442979
Target:  5'- gAGGUcACUcCCGCCGCC-CUGAcGGUGGu -3'
miRNA:   3'- -UCCA-UGA-GGUGGCGGcGACU-CCGCCu -5'
3603 5' -60.7 NC_001650.1 + 53042 0.68 0.611564
Target:  5'- gGGGUAuuuCUCCccaaaaugACgGCCGC-GAGGCGGu -3'
miRNA:   3'- -UCCAU---GAGG--------UGgCGGCGaCUCCGCCu -5'
3603 5' -60.7 NC_001650.1 + 57958 0.67 0.718596
Target:  5'- cGGGcUACUCCcCCGUCGCccaccccgcGAGGcCGGGc -3'
miRNA:   3'- -UCC-AUGAGGuGGCGGCGa--------CUCC-GCCU- -5'
3603 5' -60.7 NC_001650.1 + 62342 0.69 0.601778
Target:  5'- uGGGUGCUCCAgggaacagccuCCuCCGagGAGGUGGAg -3'
miRNA:   3'- -UCCAUGAGGU-----------GGcGGCgaCUCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 79089 0.68 0.631173
Target:  5'- cGGGccugGCUCCgggcGCgGCCGCUcggcGGGCGGGa -3'
miRNA:   3'- -UCCa---UGAGG----UGgCGGCGAc---UCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 82989 0.68 0.660573
Target:  5'- gAGGgACcUCAUCGCCaggggGCUgGAGGCGGAg -3'
miRNA:   3'- -UCCaUGaGGUGGCGG-----CGA-CUCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 89469 0.73 0.361217
Target:  5'- gGGGUcCUgCGCUggGCCGCcGAGGCGGGg -3'
miRNA:   3'- -UCCAuGAgGUGG--CGGCGaCUCCGCCU- -5'
3603 5' -60.7 NC_001650.1 + 90402 0.66 0.746797
Target:  5'- ---cGCUuccCCACCGCCGCcagGGGGCGc- -3'
miRNA:   3'- uccaUGA---GGUGGCGGCGa--CUCCGCcu -5'
3603 5' -60.7 NC_001650.1 + 91141 0.66 0.737478
Target:  5'- uGGGUcCUCC-CgGCCGCgGGGGCugcugcGGAu -3'
miRNA:   3'- -UCCAuGAGGuGgCGGCGaCUCCG------CCU- -5'
3603 5' -60.7 NC_001650.1 + 94926 0.7 0.515333
Target:  5'- cAGGaGC-CCAaagaGCCGCUcgGAGGCGGAg -3'
miRNA:   3'- -UCCaUGaGGUgg--CGGCGA--CUCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.