miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3604 3' -51.7 NC_001650.1 + 24852 1.12 0.006093
Target:  5'- aGGUGUUAUCCACGCCGGCCACAAACAg -3'
miRNA:   3'- -CCACAAUAGGUGCGGCCGGUGUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 128610 0.68 0.97304
Target:  5'- aGGUGgUGUCCAUGUgccccgCGGCCAgGGAg- -3'
miRNA:   3'- -CCACaAUAGGUGCG------GCCGGUgUUUgu -5'
3604 3' -51.7 NC_001650.1 + 49570 0.68 0.969889
Target:  5'- aGGUGUUggcucugGUCCugaugGCCGuGCCACAGAg- -3'
miRNA:   3'- -CCACAA-------UAGGug---CGGC-CGGUGUUUgu -5'
3604 3' -51.7 NC_001650.1 + 71182 0.69 0.960341
Target:  5'- uGGgGUUGUCCACcaGCCuGGaCACAAACu -3'
miRNA:   3'- -CCaCAAUAGGUG--CGG-CCgGUGUUUGu -5'
3604 3' -51.7 NC_001650.1 + 71500 0.69 0.952242
Target:  5'- gGGUGUUGUucuuguuaaccacCCACGCCu-CCACGGGCu -3'
miRNA:   3'- -CCACAAUA-------------GGUGCGGccGGUGUUUGu -5'
3604 3' -51.7 NC_001650.1 + 70846 0.7 0.948454
Target:  5'- aGGUGUgcUCCACcagGUgGGCCuuGAACAu -3'
miRNA:   3'- -CCACAauAGGUG---CGgCCGGugUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 23582 0.66 0.993723
Target:  5'- aGG-GUUcgaCCACcaccauagaguaGUCGGCCACGGGCAg -3'
miRNA:   3'- -CCaCAAua-GGUG------------CGGCCGGUGUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 107162 0.66 0.992772
Target:  5'- uGGUGa---CCGCGCCccccagGGCCGCcaggGAACAg -3'
miRNA:   3'- -CCACaauaGGUGCGG------CCGGUG----UUUGU- -5'
3604 3' -51.7 NC_001650.1 + 128782 0.67 0.987762
Target:  5'- cGGUGggcccaGUCCGCGUuggcgaUGGCCGCcAGCu -3'
miRNA:   3'- -CCACaa----UAGGUGCG------GCCGGUGuUUGu -5'
3604 3' -51.7 NC_001650.1 + 83515 0.68 0.970186
Target:  5'- uGG-GUcAUCCugGgCGGCCGuCAGGCu -3'
miRNA:   3'- -CCaCAaUAGGugCgGCCGGU-GUUUGu -5'
3604 3' -51.7 NC_001650.1 + 158063 0.69 0.952651
Target:  5'- uGGUGUgcaccUCCACcCUGGCCACcuGCc -3'
miRNA:   3'- -CCACAau---AGGUGcGGCCGGUGuuUGu -5'
3604 3' -51.7 NC_001650.1 + 65193 0.72 0.879122
Target:  5'- --cGUccUCCAgGCCGGCCACGGcCAu -3'
miRNA:   3'- ccaCAauAGGUgCGGCCGGUGUUuGU- -5'
3604 3' -51.7 NC_001650.1 + 128900 0.66 0.991708
Target:  5'- ------cUCCACGUCGGCCAgGAuGCGc -3'
miRNA:   3'- ccacaauAGGUGCGGCCGGUgUU-UGU- -5'
3604 3' -51.7 NC_001650.1 + 132042 0.71 0.893088
Target:  5'- gGGUGacGUCgGCgGCCGGCCACcgccccggccuGAACAg -3'
miRNA:   3'- -CCACaaUAGgUG-CGGCCGGUG-----------UUUGU- -5'
3604 3' -51.7 NC_001650.1 + 122752 0.68 0.970186
Target:  5'- -----gGUCCugGCaGGCCugGGACAg -3'
miRNA:   3'- ccacaaUAGGugCGgCCGGugUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 57622 0.66 0.991708
Target:  5'- aGUGccGUgCGCGCCcgGGCCGCAGGgGg -3'
miRNA:   3'- cCACaaUAgGUGCGG--CCGGUGUUUgU- -5'
3604 3' -51.7 NC_001650.1 + 42741 0.7 0.939338
Target:  5'- gGGUGUgacgGUCCgggcGCGCCgguGGCCACcuGCc -3'
miRNA:   3'- -CCACAa---UAGG----UGCGG---CCGGUGuuUGu -5'
3604 3' -51.7 NC_001650.1 + 82296 0.68 0.980413
Target:  5'- cGGUcaucGUUGggcaUCACGuuGGCCACcAGCAg -3'
miRNA:   3'- -CCA----CAAUa---GGUGCggCCGGUGuUUGU- -5'
3604 3' -51.7 NC_001650.1 + 120526 0.67 0.984414
Target:  5'- aGGUGcc-UCUggGCGCCGGCgACcuGCAg -3'
miRNA:   3'- -CCACaauAGG--UGCGGCCGgUGuuUGU- -5'
3604 3' -51.7 NC_001650.1 + 89491 0.67 0.982499
Target:  5'- aGGcGggGUUCGCGUgGGCCGCcaucGACAa -3'
miRNA:   3'- -CCaCaaUAGGUGCGgCCGGUGu---UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.