miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 3' -63.1 NC_001650.1 + 117870 0.71 0.342868
Target:  5'- uGGGCgG-GGuguGcCCCACGCCCGGGGu -3'
miRNA:   3'- gUCCGgUaCCu--C-GGGUGCGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 79168 0.71 0.342868
Target:  5'- uGGGCCGcGGGGCauCUGCGCCCccaggAGGGAc -3'
miRNA:   3'- gUCCGGUaCCUCG--GGUGCGGG-----UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 155161 0.71 0.348004
Target:  5'- uGGGCCcuccucccgugguaGUGGAgggcgaucauGCCCaggGCGUCCAGGGAg -3'
miRNA:   3'- gUCCGG--------------UACCU----------CGGG---UGCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 128260 0.71 0.349481
Target:  5'- aCGGGCCcgugcccgaggggGUGGGGCCCAUggagagccaGCCgGGGGu -3'
miRNA:   3'- -GUCCGG-------------UACCUCGGGUG---------CGGgUCCCu -5'
3605 3' -63.1 NC_001650.1 + 122398 0.71 0.350221
Target:  5'- cCAGGCCucGUGGAagugGUCCAgcagguUGCCCAGGGc -3'
miRNA:   3'- -GUCCGG--UACCU----CGGGU------GCGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 26799 0.71 0.350221
Target:  5'- gCGGGCCGggGGAGCCgCGCGCCCc---- -3'
miRNA:   3'- -GUCCGGUa-CCUCGG-GUGCGGGucccu -5'
3605 3' -63.1 NC_001650.1 + 55281 0.71 0.350221
Target:  5'- gGGaGCCAgcGAGCgCGCGCCgCAGGGAc -3'
miRNA:   3'- gUC-CGGUacCUCGgGUGCGG-GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 22707 0.71 0.357686
Target:  5'- gGGGCCucgaggcGGGGCCCAUGCCgGGcGGc -3'
miRNA:   3'- gUCCGGua-----CCUCGGGUGCGGgUC-CCu -5'
3605 3' -63.1 NC_001650.1 + 31268 0.71 0.357686
Target:  5'- gAGGCCAUugccgacgcGGAGCCCcucaaGCCCgacGGGGGc -3'
miRNA:   3'- gUCCGGUA---------CCUCGGGug---CGGG---UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 121950 0.71 0.360702
Target:  5'- gCGGGCCGugcugcuccccgagcUGGAGgCCAUGCUgCGGGGGc -3'
miRNA:   3'- -GUCCGGU---------------ACCUCgGGUGCGG-GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 80690 0.7 0.365261
Target:  5'- -uGGCCG-GGGGCUaCACGgaCCCGGGGAg -3'
miRNA:   3'- guCCGGUaCCUCGG-GUGC--GGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 156083 0.7 0.372172
Target:  5'- gCAGGCCucgaGGAcCCCGgccagguUGCCCAGGGGc -3'
miRNA:   3'- -GUCCGGua--CCUcGGGU-------GCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 164851 0.7 0.38074
Target:  5'- gGGaGCCcgGGuGCCgCGCgGCCCGGGGc -3'
miRNA:   3'- gUC-CGGuaCCuCGG-GUG-CGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 91818 0.7 0.38074
Target:  5'- uGGGCCGUGGA-CUCG-GCCgAGGGAc -3'
miRNA:   3'- gUCCGGUACCUcGGGUgCGGgUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 5874 0.7 0.396652
Target:  5'- aGGGCCaAUGGGGgcuaCCCACuaagcCCCGGGGGu -3'
miRNA:   3'- gUCCGG-UACCUC----GGGUGc----GGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 172581 0.7 0.396652
Target:  5'- aGGGCCaAUGGGGgcuaCCCACuaagcCCCGGGGGu -3'
miRNA:   3'- gUCCGG-UACCUC----GGGUGc----GGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 136132 0.7 0.396652
Target:  5'- uCAGGC--UGGAGCCCAgGUgcauguuucUCAGGGAg -3'
miRNA:   3'- -GUCCGguACCUCGGGUgCG---------GGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 26831 0.7 0.404767
Target:  5'- -uGGCCGaccUGGGGCaCCugcUGCCCGGGGc -3'
miRNA:   3'- guCCGGU---ACCUCG-GGu--GCGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 70048 0.7 0.412985
Target:  5'- aAGGgCAUcaaGGAGUCCGCgGCCgAGGGGu -3'
miRNA:   3'- gUCCgGUA---CCUCGGGUG-CGGgUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 172739 0.7 0.416302
Target:  5'- gGGGCCuagGGGGCCUGCccacucuacccuaagGCCCAaugGGGAa -3'
miRNA:   3'- gUCCGGua-CCUCGGGUG---------------CGGGU---CCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.