miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 3' -63.1 NC_001650.1 + 24974 1.08 0.000933
Target:  5'- gCAGGCCAUGGAGCCCACGCCCAGGGAg -3'
miRNA:   3'- -GUCCGGUACCUCGGGUGCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 158264 0.82 0.065461
Target:  5'- -cGGCCGUGGAgGCCUggAUGCCCAGGGGc -3'
miRNA:   3'- guCCGGUACCU-CGGG--UGCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 66422 0.76 0.159348
Target:  5'- gCGGGcCCGUGGAGCCCGcCGCCaccggcuuggagaAGGGGg -3'
miRNA:   3'- -GUCC-GGUACCUCGGGU-GCGGg------------UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 130577 0.76 0.172136
Target:  5'- gGGGCCGUGGAGCUCcacgaguuggagugcGCGCCCAcgagacggacgacguGGGGg -3'
miRNA:   3'- gUCCGGUACCUCGGG---------------UGCGGGU---------------CCCU- -5'
3605 3' -63.1 NC_001650.1 + 23401 0.75 0.194874
Target:  5'- gCGGGCCccccuuccucgAUGGAGCCCugGaCCuGGGAg -3'
miRNA:   3'- -GUCCGG-----------UACCUCGGGugCgGGuCCCU- -5'
3605 3' -63.1 NC_001650.1 + 58834 0.74 0.218662
Target:  5'- uCGGGCCcgGGAGaggcagaugagccCCCACGUCCGcGGGGu -3'
miRNA:   3'- -GUCCGGuaCCUC-------------GGGUGCGGGU-CCCU- -5'
3605 3' -63.1 NC_001650.1 + 50178 0.74 0.234962
Target:  5'- uGGGCC--GGGGCUCGCGUCCcGGGAu -3'
miRNA:   3'- gUCCGGuaCCUCGGGUGCGGGuCCCU- -5'
3605 3' -63.1 NC_001650.1 + 146148 0.74 0.234962
Target:  5'- cCGGGCCGggcUGGGGCaCAgggaGCCCGGGGAc -3'
miRNA:   3'- -GUCCGGU---ACCUCGgGUg---CGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 68808 0.73 0.251695
Target:  5'- gCAGGCC--GGGGCCCuCGCUCgAGGGGc -3'
miRNA:   3'- -GUCCGGuaCCUCGGGuGCGGG-UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 35694 0.73 0.275518
Target:  5'- -uGGCCggGGGGCUCACGgCCGcGGGGu -3'
miRNA:   3'- guCCGGuaCCUCGGGUGCgGGU-CCCU- -5'
3605 3' -63.1 NC_001650.1 + 24067 0.72 0.287452
Target:  5'- gGGGCCuGUGGgcGGCCCugGCCgagauggccauggCGGGGAu -3'
miRNA:   3'- gUCCGG-UACC--UCGGGugCGG-------------GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 111187 0.72 0.288091
Target:  5'- uCAGGCCcaGGcggcucaggcGGCCCGCGCCCccaggcaggagcAGGGAg -3'
miRNA:   3'- -GUCCGGuaCC----------UCGGGUGCGGG------------UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 92020 0.72 0.294545
Target:  5'- -cGGCC---GAGUCCACgGCCCAGGGGc -3'
miRNA:   3'- guCCGGuacCUCGGGUG-CGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 57637 0.72 0.299129
Target:  5'- cCAGGCCucUGGGggagugccgugcgcGCCCGgGCCgCAGGGGg -3'
miRNA:   3'- -GUCCGGu-ACCU--------------CGGGUgCGG-GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 52611 0.72 0.30111
Target:  5'- uGGGaug-GGGGCCaCugGCCCGGGGGu -3'
miRNA:   3'- gUCCgguaCCUCGG-GugCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 78867 0.72 0.307789
Target:  5'- cCAGGCCGUGGcGGUCCaggaACGCCUcGGGc -3'
miRNA:   3'- -GUCCGGUACC-UCGGG----UGCGGGuCCCu -5'
3605 3' -63.1 NC_001650.1 + 174966 0.72 0.31253
Target:  5'- gGGGCCAauggGGGGCCUguggguauuacucaAUGCCCAGuGGGg -3'
miRNA:   3'- gUCCGGUa---CCUCGGG--------------UGCGGGUC-CCU- -5'
3605 3' -63.1 NC_001650.1 + 8259 0.72 0.31253
Target:  5'- gGGGCCAauggGGGGCCUguggguauuacucaAUGCCCAGuGGGg -3'
miRNA:   3'- gUCCGGUa---CCUCGGG--------------UGCGGGUC-CCU- -5'
3605 3' -63.1 NC_001650.1 + 80110 0.72 0.314579
Target:  5'- -cGGCCAguugGGAGUCCACuaCCAGGa- -3'
miRNA:   3'- guCCGGUa---CCUCGGGUGcgGGUCCcu -5'
3605 3' -63.1 NC_001650.1 + 136596 0.71 0.340684
Target:  5'- cCAGGCCcgaagacaaacccAGCCCAcCGCCCGGGGGc -3'
miRNA:   3'- -GUCCGGuacc---------UCGGGU-GCGGGUCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.