miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 3' -63.1 NC_001650.1 + 4725 0.67 0.575775
Target:  5'- gGGGCUccGGAggcccuccguGCCCG-GCUCGGGGAa -3'
miRNA:   3'- gUCCGGuaCCU----------CGGGUgCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 5874 0.7 0.396652
Target:  5'- aGGGCCaAUGGGGgcuaCCCACuaagcCCCGGGGGu -3'
miRNA:   3'- gUCCGG-UACCUC----GGGUGc----GGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 6032 0.7 0.416302
Target:  5'- gGGGCCuagGGGGCCUGCccacucuacccuaagGCCCAaugGGGAa -3'
miRNA:   3'- gUCCGGua-CCUCGGGUG---------------CGGGU---CCCU- -5'
3605 3' -63.1 NC_001650.1 + 6280 0.66 0.613514
Target:  5'- gGGGCCuUGGgcaauaaAGcCCCGgGCCCAaugGGGAc -3'
miRNA:   3'- gUCCGGuACC-------UC-GGGUgCGGGU---CCCU- -5'
3605 3' -63.1 NC_001650.1 + 6807 0.69 0.445996
Target:  5'- aGGGCauUGGgcaauaaAGCCCAUGCCCAauGGGGg -3'
miRNA:   3'- gUCCGguACC-------UCGGGUGCGGGU--CCCU- -5'
3605 3' -63.1 NC_001650.1 + 7056 0.68 0.491283
Target:  5'- uUAGGgCAUGGGGCaauaaagcccCCugGCCCAauGGGu -3'
miRNA:   3'- -GUCCgGUACCUCG----------GGugCGGGU--CCCu -5'
3605 3' -63.1 NC_001650.1 + 8259 0.72 0.31253
Target:  5'- gGGGCCAauggGGGGCCUguggguauuacucaAUGCCCAGuGGGg -3'
miRNA:   3'- gUCCGGUa---CCUCGGG--------------UGCGGGUC-CCU- -5'
3605 3' -63.1 NC_001650.1 + 13940 0.67 0.547102
Target:  5'- cCGGGaCCAUGGAGCCCcCaUCCcuGGAc -3'
miRNA:   3'- -GUCC-GGUACCUCGGGuGcGGGucCCU- -5'
3605 3' -63.1 NC_001650.1 + 14325 0.69 0.463486
Target:  5'- -uGGUCA-GGGGUCCugGCCUguaagagAGGGAg -3'
miRNA:   3'- guCCGGUaCCUCGGGugCGGG-------UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 14373 0.67 0.528238
Target:  5'- aGGGuCCAUGuGGGUCCAgggaGUCCGGGGu -3'
miRNA:   3'- gUCC-GGUAC-CUCGGGUg---CGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 15202 0.67 0.547102
Target:  5'- aGGGCCaAUGaagcgucgcgcGGGCCgCGCGUugCCAGGGAa -3'
miRNA:   3'- gUCCGG-UAC-----------CUCGG-GUGCG--GGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 19040 0.66 0.604775
Target:  5'- cCAGGCCugaAUGGccgaGGCCgugCugGCCagCAGGGAa -3'
miRNA:   3'- -GUCCGG---UACC----UCGG---GugCGG--GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 21680 0.68 0.50962
Target:  5'- -cGGCgCGggGGGGCCCugcacccUGUCCAGGGAc -3'
miRNA:   3'- guCCG-GUa-CCUCGGGu------GCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 21964 0.66 0.643665
Target:  5'- -cGGCUAccUGG-GCuUCACGCCCcucGGGGAc -3'
miRNA:   3'- guCCGGU--ACCuCG-GGUGCGGG---UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 22171 0.67 0.585413
Target:  5'- aGGGgCGUGaAGCCCAgGUagCCGGGGGu -3'
miRNA:   3'- gUCCgGUACcUCGGGUgCG--GGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 22707 0.71 0.357686
Target:  5'- gGGGCCucgaggcGGGGCCCAUGCCgGGcGGc -3'
miRNA:   3'- gUCCGGua-----CCUCGGGUGCGGgUC-CCu -5'
3605 3' -63.1 NC_001650.1 + 23401 0.75 0.194874
Target:  5'- gCGGGCCccccuuccucgAUGGAGCCCugGaCCuGGGAg -3'
miRNA:   3'- -GUCCGG-----------UACCUCGGGugCgGGuCCCU- -5'
3605 3' -63.1 NC_001650.1 + 23788 0.67 0.575775
Target:  5'- -uGGCUAUGGGGgCCAgGgCCAGGc- -3'
miRNA:   3'- guCCGGUACCUCgGGUgCgGGUCCcu -5'
3605 3' -63.1 NC_001650.1 + 24067 0.72 0.287452
Target:  5'- gGGGCCuGUGGgcGGCCCugGCCgagauggccauggCGGGGAu -3'
miRNA:   3'- gUCCGG-UACC--UCGGGugCGG-------------GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 24326 0.66 0.604775
Target:  5'- --aGCCugacGGGGaccuCCACGUCCAGGGAc -3'
miRNA:   3'- gucCGGua--CCUCg---GGUGCGGGUCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.