miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 3' -63.1 NC_001650.1 + 91818 0.7 0.38074
Target:  5'- uGGGCCGUGGA-CUCG-GCCgAGGGAc -3'
miRNA:   3'- gUCCGGUACCUcGGGUgCGGgUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 155161 0.71 0.348004
Target:  5'- uGGGCCcuccucccgugguaGUGGAgggcgaucauGCCCaggGCGUCCAGGGAg -3'
miRNA:   3'- gUCCGG--------------UACCU----------CGGG---UGCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 128260 0.71 0.349481
Target:  5'- aCGGGCCcgugcccgaggggGUGGGGCCCAUggagagccaGCCgGGGGu -3'
miRNA:   3'- -GUCCGG-------------UACCUCGGGUG---------CGGgUCCCu -5'
3605 3' -63.1 NC_001650.1 + 26799 0.71 0.350221
Target:  5'- gCGGGCCGggGGAGCCgCGCGCCCc---- -3'
miRNA:   3'- -GUCCGGUa-CCUCGG-GUGCGGGucccu -5'
3605 3' -63.1 NC_001650.1 + 55281 0.71 0.350221
Target:  5'- gGGaGCCAgcGAGCgCGCGCCgCAGGGAc -3'
miRNA:   3'- gUC-CGGUacCUCGgGUGCGG-GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 31268 0.71 0.357686
Target:  5'- gAGGCCAUugccgacgcGGAGCCCcucaaGCCCgacGGGGGc -3'
miRNA:   3'- gUCCGGUA---------CCUCGGGug---CGGG---UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 121950 0.71 0.360702
Target:  5'- gCGGGCCGugcugcuccccgagcUGGAGgCCAUGCUgCGGGGGc -3'
miRNA:   3'- -GUCCGGU---------------ACCUCgGGUGCGG-GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 80690 0.7 0.365261
Target:  5'- -uGGCCG-GGGGCUaCACGgaCCCGGGGAg -3'
miRNA:   3'- guCCGGUaCCUCGG-GUGC--GGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 156083 0.7 0.372172
Target:  5'- gCAGGCCucgaGGAcCCCGgccagguUGCCCAGGGGc -3'
miRNA:   3'- -GUCCGGua--CCUcGGGU-------GCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 136596 0.71 0.340684
Target:  5'- cCAGGCCcgaagacaaacccAGCCCAcCGCCCGGGGGc -3'
miRNA:   3'- -GUCCGGuacc---------UCGGGU-GCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 52611 0.72 0.30111
Target:  5'- uGGGaug-GGGGCCaCugGCCCGGGGGu -3'
miRNA:   3'- gUCCgguaCCUCGG-GugCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 111187 0.72 0.288091
Target:  5'- uCAGGCCcaGGcggcucaggcGGCCCGCGCCCccaggcaggagcAGGGAg -3'
miRNA:   3'- -GUCCGGuaCC----------UCGGGUGCGGG------------UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 66422 0.76 0.159348
Target:  5'- gCGGGcCCGUGGAGCCCGcCGCCaccggcuuggagaAGGGGg -3'
miRNA:   3'- -GUCC-GGUACCUCGGGU-GCGGg------------UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 130577 0.76 0.172136
Target:  5'- gGGGCCGUGGAGCUCcacgaguuggagugcGCGCCCAcgagacggacgacguGGGGg -3'
miRNA:   3'- gUCCGGUACCUCGGG---------------UGCGGGU---------------CCCU- -5'
3605 3' -63.1 NC_001650.1 + 23401 0.75 0.194874
Target:  5'- gCGGGCCccccuuccucgAUGGAGCCCugGaCCuGGGAg -3'
miRNA:   3'- -GUCCGG-----------UACCUCGGGugCgGGuCCCU- -5'
3605 3' -63.1 NC_001650.1 + 58834 0.74 0.218662
Target:  5'- uCGGGCCcgGGAGaggcagaugagccCCCACGUCCGcGGGGu -3'
miRNA:   3'- -GUCCGGuaCCUC-------------GGGUGCGGGU-CCCU- -5'
3605 3' -63.1 NC_001650.1 + 50178 0.74 0.234962
Target:  5'- uGGGCC--GGGGCUCGCGUCCcGGGAu -3'
miRNA:   3'- gUCCGGuaCCUCGGGUGCGGGuCCCU- -5'
3605 3' -63.1 NC_001650.1 + 68808 0.73 0.251695
Target:  5'- gCAGGCC--GGGGCCCuCGCUCgAGGGGc -3'
miRNA:   3'- -GUCCGGuaCCUCGGGuGCGGG-UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 35694 0.73 0.275518
Target:  5'- -uGGCCggGGGGCUCACGgCCGcGGGGu -3'
miRNA:   3'- guCCGGuaCCUCGGGUGCgGGU-CCCU- -5'
3605 3' -63.1 NC_001650.1 + 24067 0.72 0.287452
Target:  5'- gGGGCCuGUGGgcGGCCCugGCCgagauggccauggCGGGGAu -3'
miRNA:   3'- gUCCGG-UACC--UCGGGugCGG-------------GUCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.