miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 3' -63.1 NC_001650.1 + 58401 0.66 0.608657
Target:  5'- gGGGCCggGGAcgcguaGCCCuccgcgaugGCGCCCcucuccuccgggcucAGGGAg -3'
miRNA:   3'- gUCCGGuaCCU------CGGG---------UGCGGG---------------UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 88616 0.66 0.624209
Target:  5'- -cGGCCAggGGGGUCUACuccuGCCCcggcggcgacgGGGGAg -3'
miRNA:   3'- guCCGGUa-CCUCGGGUG----CGGG-----------UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 130642 0.66 0.614486
Target:  5'- gAGGCCAuagagacccUGGAGgCCAgGagggucaCCGGGGGc -3'
miRNA:   3'- gUCCGGU---------ACCUCgGGUgCg------GGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 21964 0.66 0.643665
Target:  5'- -cGGCUAccUGG-GCuUCACGCCCcucGGGGAc -3'
miRNA:   3'- guCCGGU--ACCuCG-GGUGCGGG---UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 54185 0.66 0.633937
Target:  5'- cCAGucGCCgGUGGAgcucccgggccGCCCAgGCUCAGGGu -3'
miRNA:   3'- -GUC--CGG-UACCU-----------CGGGUgCGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 59735 0.66 0.595082
Target:  5'- aGGGgCGUcgaGGGGCCCgugGCcCCCGGGGGc -3'
miRNA:   3'- gUCCgGUA---CCUCGGG---UGcGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 26460 0.66 0.614486
Target:  5'- cCAGGCCAgcgUGG-GCCCGugcggcuuCGuguaccuguacCCCGGGGAc -3'
miRNA:   3'- -GUCCGGU---ACCuCGGGU--------GC-----------GGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 77045 0.66 0.614486
Target:  5'- uGGGCCucgggGGAGCCCGUGUCCAcGcGGc -3'
miRNA:   3'- gUCCGGua---CCUCGGGUGCGGGU-C-CCu -5'
3605 3' -63.1 NC_001650.1 + 114796 0.66 0.595082
Target:  5'- gAGGgCggGGAuccuGCaCACGCCCAGGGc -3'
miRNA:   3'- gUCCgGuaCCU----CGgGUGCGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 129449 0.66 0.6281
Target:  5'- gAGGCCAgGGAGUUCGCGgCCAagaagcuggaggagcGGGu -3'
miRNA:   3'- gUCCGGUaCCUCGGGUGCgGGU---------------CCCu -5'
3605 3' -63.1 NC_001650.1 + 145496 0.66 0.604775
Target:  5'- aGGGCCG-GGGGCuCCugGUcagcuggagcuUCAGGGGc -3'
miRNA:   3'- gUCCGGUaCCUCG-GGugCG-----------GGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 155770 0.66 0.633937
Target:  5'- gCAGGCaCAgcacGGccGCCCccacccgcCGCCCGGGGGa -3'
miRNA:   3'- -GUCCG-GUa---CCu-CGGGu-------GCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 90521 0.66 0.632964
Target:  5'- -uGGCCccAUGGAGCUuguacauCAUgaGCCCGGGGu -3'
miRNA:   3'- guCCGG--UACCUCGG-------GUG--CGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 66139 0.66 0.595082
Target:  5'- gUAGGCCAgaaaGGccGCCC-CGCaCAGGGGg -3'
miRNA:   3'- -GUCCGGUa---CCu-CGGGuGCGgGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 160862 0.66 0.604775
Target:  5'- cCAGGCCAugaUGGAGCCUuC-UCCAacGGGGu -3'
miRNA:   3'- -GUCCGGU---ACCUCGGGuGcGGGU--CCCU- -5'
3605 3' -63.1 NC_001650.1 + 108230 0.66 0.632964
Target:  5'- -cGGCCGUGGAcgaggcgGUCaACGCCUucAGGGGu -3'
miRNA:   3'- guCCGGUACCU-------CGGgUGCGGG--UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 126455 0.66 0.643665
Target:  5'- -cGGCCGUccGAGCgCGCGCgUGGGGGa -3'
miRNA:   3'- guCCGGUAc-CUCGgGUGCGgGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 51319 0.66 0.633937
Target:  5'- gGGGaCgGUGGccucGGCCCA-GCaCCAGGGGc -3'
miRNA:   3'- gUCC-GgUACC----UCGGGUgCG-GGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 19040 0.66 0.604775
Target:  5'- cCAGGCCugaAUGGccgaGGCCgugCugGCCagCAGGGAa -3'
miRNA:   3'- -GUCCGG---UACC----UCGG---GugCGG--GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 68737 0.66 0.633937
Target:  5'- gCAcGUCAUGGuGGCCCGgGucuCCCGGGGGg -3'
miRNA:   3'- -GUcCGGUACC-UCGGGUgC---GGGUCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.