miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 3' -60.2 NC_001650.1 + 30876 0.7 0.542212
Target:  5'- gGCCGCCuggccgagaucuccaACCugguauacuggAGCUcGGCCGCGG-ACAGg -3'
miRNA:   3'- -UGGUGG---------------UGG-----------UCGA-CCGGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 133296 0.7 0.547031
Target:  5'- cCCugCACCuGGCUcgccgccGGCCGCGGcUugGGa -3'
miRNA:   3'- uGGugGUGG-UCGA-------CCGGCGCC-AugUC- -5'
3608 3' -60.2 NC_001650.1 + 122428 0.7 0.547996
Target:  5'- gGCCucgGgCACCAGCUcccucGCCGCGGUcCAGg -3'
miRNA:   3'- -UGG---UgGUGGUCGAc----CGGCGCCAuGUC- -5'
3608 3' -60.2 NC_001650.1 + 73884 0.69 0.55768
Target:  5'- cCCGCCACCAGC-GGCa-CGGaccUGCAGu -3'
miRNA:   3'- uGGUGGUGGUCGaCCGgcGCC---AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 142907 0.69 0.55768
Target:  5'- cGCCGCCGCCcGCUcgccgcuuaucGGCCggcGCGGcgGCGGa -3'
miRNA:   3'- -UGGUGGUGGuCGA-----------CCGG---CGCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 27072 0.69 0.577184
Target:  5'- cACCACCACCcccgcuauguGGCUcucGGCCcCGGgcaGCAGg -3'
miRNA:   3'- -UGGUGGUGG----------UCGA---CCGGcGCCa--UGUC- -5'
3608 3' -60.2 NC_001650.1 + 51302 0.69 0.586994
Target:  5'- cCCAgCACCAGg-GGCUGaacaGGUACGGg -3'
miRNA:   3'- uGGUgGUGGUCgaCCGGCg---CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 58668 0.69 0.586994
Target:  5'- uCCGCCcugguccucGCCAcGCUGGaCGCGGcGCAGa -3'
miRNA:   3'- uGGUGG---------UGGU-CGACCgGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 48364 0.69 0.586994
Target:  5'- cACCACCGCCcagaagauguaGGUgcagaUGGCCGCGGggguCAu -3'
miRNA:   3'- -UGGUGGUGG-----------UCG-----ACCGGCGCCau--GUc -5'
3608 3' -60.2 NC_001650.1 + 45101 0.69 0.596835
Target:  5'- aGCgGgCugCGGCUugcGGCCGCGGUuccCAGg -3'
miRNA:   3'- -UGgUgGugGUCGA---CCGGCGCCAu--GUC- -5'
3608 3' -60.2 NC_001650.1 + 72927 0.69 0.6067
Target:  5'- uGCC-CCACCAGCuUGGCCcucucGUGGgugGCGa -3'
miRNA:   3'- -UGGuGGUGGUCG-ACCGG-----CGCCa--UGUc -5'
3608 3' -60.2 NC_001650.1 + 27974 0.69 0.6067
Target:  5'- -gCACauggGCguGUUGGCCGCGGUGCc- -3'
miRNA:   3'- ugGUGg---UGguCGACCGGCGCCAUGuc -5'
3608 3' -60.2 NC_001650.1 + 132826 0.69 0.6067
Target:  5'- gGCCGCCugCAgGUUGGgggccagcgccuCCGCGGgcCAGu -3'
miRNA:   3'- -UGGUGGugGU-CGACC------------GGCGCCauGUC- -5'
3608 3' -60.2 NC_001650.1 + 11237 0.69 0.6067
Target:  5'- uGCCACgC-CCGGCUGccGCUGCGGcgACGGc -3'
miRNA:   3'- -UGGUG-GuGGUCGAC--CGGCGCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 177944 0.69 0.6067
Target:  5'- uGCCACgC-CCGGCUGccGCUGCGGcgACGGc -3'
miRNA:   3'- -UGGUG-GuGGUCGAC--CGGCGCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 123819 0.68 0.616583
Target:  5'- cGCCAUgGCC--CUGGCCGUGGUGaucaAGg -3'
miRNA:   3'- -UGGUGgUGGucGACCGGCGCCAUg---UC- -5'
3608 3' -60.2 NC_001650.1 + 155101 0.68 0.616583
Target:  5'- cCCGCCACCguGGagacGGCCGUGGgguUGCGGg -3'
miRNA:   3'- uGGUGGUGG--UCga--CCGGCGCC---AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 28496 0.68 0.616583
Target:  5'- cACCACCGCCAGCacGCaccuGUaGUACAGg -3'
miRNA:   3'- -UGGUGGUGGUCGacCGg---CGcCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 25384 0.68 0.616583
Target:  5'- gGCCACUGCCagagguaguAGCUGGCggugauauCGUGGaGCAGg -3'
miRNA:   3'- -UGGUGGUGG---------UCGACCG--------GCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 73244 0.68 0.625487
Target:  5'- uCCACCACgAGCUGGCCacccucaacaccaGCcugGGcUACAGc -3'
miRNA:   3'- uGGUGGUGgUCGACCGG-------------CG---CC-AUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.