miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3610 3' -54.6 NC_001650.1 + 28708 1.11 0.004028
Target:  5'- cGGGCGGCCGAGUCCACGUCAAAGAAGu -3'
miRNA:   3'- -CCCGCCGGCUCAGGUGCAGUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 92029 0.78 0.42543
Target:  5'- gGGGUcccucGGCCGAGUCCACGgccCAGGGGc- -3'
miRNA:   3'- -CCCG-----CCGGCUCAGGUGCa--GUUUCUuc -5'
3610 3' -54.6 NC_001650.1 + 35805 0.75 0.567012
Target:  5'- cGGCGGCCGuc-CCGCGcCAGGGggGc -3'
miRNA:   3'- cCCGCCGGCucaGGUGCaGUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 71973 0.75 0.576999
Target:  5'- uGGUGGCCGcGUCCaccACGUgGGAGAGGc -3'
miRNA:   3'- cCCGCCGGCuCAGG---UGCAgUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 63499 0.75 0.587025
Target:  5'- aGGGUGGCCGAcaggGgaugCC-UGUCAAAGAGGa -3'
miRNA:   3'- -CCCGCCGGCU----Ca---GGuGCAGUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 25011 0.75 0.607165
Target:  5'- cGGGCgagacGGCCauGUCCcCGUCAAAGAGGa -3'
miRNA:   3'- -CCCG-----CCGGcuCAGGuGCAGUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 131735 0.74 0.647606
Target:  5'- cGGGCGGCCacguuGaCCGCGUgggCGAAGAGGg -3'
miRNA:   3'- -CCCGCCGGcu---CaGGUGCA---GUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 14887 0.73 0.667785
Target:  5'- cGGGU--CCGGGUCCGCGagGAGGggGg -3'
miRNA:   3'- -CCCGccGGCUCAGGUGCagUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 181594 0.73 0.667785
Target:  5'- cGGGU--CCGGGUCCGCGagGAGGggGg -3'
miRNA:   3'- -CCCGccGGCUCAGGUGCagUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 110792 0.73 0.687851
Target:  5'- gGGGCGGCCccuGUUCGCGUUGcuGAGGc -3'
miRNA:   3'- -CCCGCCGGcu-CAGGUGCAGUuuCUUC- -5'
3610 3' -54.6 NC_001650.1 + 136098 0.73 0.707736
Target:  5'- gGGGCGGCCuuGUCCAgccccaggGUCAGcAGGAGg -3'
miRNA:   3'- -CCCGCCGGcuCAGGUg-------CAGUU-UCUUC- -5'
3610 3' -54.6 NC_001650.1 + 151742 0.73 0.717589
Target:  5'- aGGGUcgGGCuCGGGUCCugGUCcuGGAu- -3'
miRNA:   3'- -CCCG--CCG-GCUCAGGugCAGuuUCUuc -5'
3610 3' -54.6 NC_001650.1 + 157453 0.73 0.721511
Target:  5'- gGGGCGGCCuucucucuucccuucGAGUCCccCGU-GAAGAAGa -3'
miRNA:   3'- -CCCGCCGG---------------CUCAGGu-GCAgUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 59867 0.72 0.727371
Target:  5'- aGGCGGCCGAggcGUCCGCG--AAGGAc- -3'
miRNA:   3'- cCCGCCGGCU---CAGGUGCagUUUCUuc -5'
3610 3' -54.6 NC_001650.1 + 119565 0.72 0.746685
Target:  5'- gGGGCaGGUCucGUCCAUGUCAAaaaacaagucAGAGGg -3'
miRNA:   3'- -CCCG-CCGGcuCAGGUGCAGUU----------UCUUC- -5'
3610 3' -54.6 NC_001650.1 + 129648 0.72 0.746685
Target:  5'- uGGCGGCCGAGuUCCA----GAGGGAGg -3'
miRNA:   3'- cCCGCCGGCUC-AGGUgcagUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 29756 0.71 0.791302
Target:  5'- aGGCGGCCGcgccccaguacucugGGUCCuCGUCcguggcugggaaaaaGAGGAAGg -3'
miRNA:   3'- cCCGCCGGC---------------UCAGGuGCAG---------------UUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 37594 0.71 0.81073
Target:  5'- cGGCGGCCGAGcgCCuguGCGcCAugagggugGAGGAGg -3'
miRNA:   3'- cCCGCCGGCUCa-GG---UGCaGU--------UUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 36505 0.71 0.819313
Target:  5'- aGGGCcaGGCUGGGgcuguaCUGCGUCAAGGAu- -3'
miRNA:   3'- -CCCG--CCGGCUCa-----GGUGCAGUUUCUuc -5'
3610 3' -54.6 NC_001650.1 + 22733 0.71 0.819313
Target:  5'- aGGGCGGUgcuGUCCACGUgcCAGAGcAGg -3'
miRNA:   3'- -CCCGCCGgcuCAGGUGCA--GUUUCuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.