miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3610 3' -54.6 NC_001650.1 + 84992 0.68 0.91338
Target:  5'- gGGGCgaGGCCGAG-CCggGCGUCGGAcccgacauacccGAGGu -3'
miRNA:   3'- -CCCG--CCGGCUCaGG--UGCAGUUU------------CUUC- -5'
3610 3' -54.6 NC_001650.1 + 88340 0.69 0.874338
Target:  5'- aGGCGGacgcgggcaGGGUCCugacgggccugcGCGUCAAGGggGa -3'
miRNA:   3'- cCCGCCgg-------CUCAGG------------UGCAGUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 145490 0.69 0.874338
Target:  5'- uGGGaaagGGCCGGGggcUCCugGUCAGcuGGAGc -3'
miRNA:   3'- -CCCg---CCGGCUC---AGGugCAGUU--UCUUc -5'
3610 3' -54.6 NC_001650.1 + 21799 0.69 0.888243
Target:  5'- aGGGCgccGGCCGAGgCCcCGggGAGGggGa -3'
miRNA:   3'- -CCCG---CCGGCUCaGGuGCagUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 142788 0.69 0.888243
Target:  5'- cGGCGGCCGGGcCCAgacggggGUCAAGccGGAGc -3'
miRNA:   3'- cCCGCCGGCUCaGGUg------CAGUUU--CUUC- -5'
3610 3' -54.6 NC_001650.1 + 28629 0.69 0.894214
Target:  5'- cGGGCa-CCGAGUCCAuccagaacgccuuUGUCAGGGGGa -3'
miRNA:   3'- -CCCGccGGCUCAGGU-------------GCAGUUUCUUc -5'
3610 3' -54.6 NC_001650.1 + 65432 0.69 0.894867
Target:  5'- --aCGGCCGGGUCCAUGUgCAAcucuguGGAAa -3'
miRNA:   3'- cccGCCGGCUCAGGUGCA-GUU------UCUUc -5'
3610 3' -54.6 NC_001650.1 + 60820 0.68 0.91338
Target:  5'- aGGCacagcGCCGcGUUCACGUCcGAGAGGu -3'
miRNA:   3'- cCCGc----CGGCuCAGGUGCAGuUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 121689 0.68 0.91338
Target:  5'- aGGCGGCCucaGAGUCCAacuUCAu-GAAGu -3'
miRNA:   3'- cCCGCCGG---CUCAGGUgc-AGUuuCUUC- -5'
3610 3' -54.6 NC_001650.1 + 56222 0.7 0.851908
Target:  5'- uGGGUGGCCGcgaacgAGUCCccggggagauagGCGcucgCGGAGAGGg -3'
miRNA:   3'- -CCCGCCGGC------UCAGG------------UGCa---GUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 130003 0.7 0.844034
Target:  5'- aGGGCGGCgCGGGacgaggCCGCGggccUCAAGGGc- -3'
miRNA:   3'- -CCCGCCG-GCUCa-----GGUGC----AGUUUCUuc -5'
3610 3' -54.6 NC_001650.1 + 27542 0.7 0.835972
Target:  5'- cGGGCuggccugccuGGCCGAGcCCACccaAAAGGAGa -3'
miRNA:   3'- -CCCG----------CCGGCUCaGGUGcagUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 136098 0.73 0.707736
Target:  5'- gGGGCGGCCuuGUCCAgccccaggGUCAGcAGGAGg -3'
miRNA:   3'- -CCCGCCGGcuCAGGUg-------CAGUU-UCUUC- -5'
3610 3' -54.6 NC_001650.1 + 151742 0.73 0.717589
Target:  5'- aGGGUcgGGCuCGGGUCCugGUCcuGGAu- -3'
miRNA:   3'- -CCCG--CCG-GCUCAGGugCAGuuUCUuc -5'
3610 3' -54.6 NC_001650.1 + 119565 0.72 0.746685
Target:  5'- gGGGCaGGUCucGUCCAUGUCAAaaaacaagucAGAGGg -3'
miRNA:   3'- -CCCG-CCGGcuCAGGUGCAGUU----------UCUUC- -5'
3610 3' -54.6 NC_001650.1 + 129648 0.72 0.746685
Target:  5'- uGGCGGCCGAGuUCCA----GAGGGAGg -3'
miRNA:   3'- cCCGCCGGCUC-AGGUgcagUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 29756 0.71 0.791302
Target:  5'- aGGCGGCCGcgccccaguacucugGGUCCuCGUCcguggcugggaaaaaGAGGAAGg -3'
miRNA:   3'- cCCGCCGGC---------------UCAGGuGCAG---------------UUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 37594 0.71 0.81073
Target:  5'- cGGCGGCCGAGcgCCuguGCGcCAugagggugGAGGAGg -3'
miRNA:   3'- cCCGCCGGCUCa-GG---UGCaGU--------UUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 22733 0.71 0.819313
Target:  5'- aGGGCGGUgcuGUCCACGUgcCAGAGcAGg -3'
miRNA:   3'- -CCCGCCGgcuCAGGUGCA--GUUUCuUC- -5'
3610 3' -54.6 NC_001650.1 + 36505 0.71 0.819313
Target:  5'- aGGGCcaGGCUGGGgcuguaCUGCGUCAAGGAu- -3'
miRNA:   3'- -CCCG--CCGGCUCa-----GGUGCAGUUUCUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.