miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3610 3' -54.6 NC_001650.1 + 3340 0.68 0.907438
Target:  5'- cGGGUGGCCG--UCUGCGUCAucuguugccAGggGc -3'
miRNA:   3'- -CCCGCCGGCucAGGUGCAGUu--------UCuuC- -5'
3610 3' -54.6 NC_001650.1 + 14329 0.7 0.844034
Target:  5'- cGGGUGGUCagGGGUCCugGccuguaAGAGAGGg -3'
miRNA:   3'- -CCCGCCGG--CUCAGGugCag----UUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 14604 0.7 0.859588
Target:  5'- aGGUGGgCaaGGGUCCAUgugGUCAAGGggGg -3'
miRNA:   3'- cCCGCCgG--CUCAGGUG---CAGUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 14703 0.66 0.969724
Target:  5'- cGGCGGgCGAG-CgAgGUgAGGGAAGg -3'
miRNA:   3'- cCCGCCgGCUCaGgUgCAgUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 14887 0.73 0.667785
Target:  5'- cGGGU--CCGGGUCCGCGagGAGGggGg -3'
miRNA:   3'- -CCCGccGGCUCAGGUGCagUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 15318 0.67 0.9396
Target:  5'- gGGGCGGCUG----CACGgggggCAGAGGAGg -3'
miRNA:   3'- -CCCGCCGGCucagGUGCa----GUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 16446 0.69 0.881399
Target:  5'- uGGGCaGGCCaccUCCAUG-CAAGGGAGg -3'
miRNA:   3'- -CCCG-CCGGcucAGGUGCaGUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 18586 0.67 0.934823
Target:  5'- aGGGCuGGCCG-GUuuaCCugGUCuggcagaguGGAGGAGa -3'
miRNA:   3'- -CCCG-CCGGCuCA---GGugCAG---------UUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 21799 0.69 0.888243
Target:  5'- aGGGCgccGGCCGAGgCCcCGggGAGGggGa -3'
miRNA:   3'- -CCCG---CCGGCUCaGGuGCagUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 22733 0.71 0.819313
Target:  5'- aGGGCGGUgcuGUCCACGUgcCAGAGcAGg -3'
miRNA:   3'- -CCCGCCGgcuCAGGUGCA--GUUUCuUC- -5'
3610 3' -54.6 NC_001650.1 + 23759 0.66 0.969724
Target:  5'- cGGGgGGCgGAGaCC-CGccCGAGGggGg -3'
miRNA:   3'- -CCCgCCGgCUCaGGuGCa-GUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 24075 0.66 0.963493
Target:  5'- uGGGCggcccuGGCCGAGauggCCAUGgCGGGGAu- -3'
miRNA:   3'- -CCCG------CCGGCUCa---GGUGCaGUUUCUuc -5'
3610 3' -54.6 NC_001650.1 + 25011 0.75 0.607165
Target:  5'- cGGGCgagacGGCCauGUCCcCGUCAAAGAGGa -3'
miRNA:   3'- -CCCG-----CCGGcuCAGGuGCAGUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 27542 0.7 0.835972
Target:  5'- cGGGCuggccugccuGGCCGAGcCCACccaAAAGGAGa -3'
miRNA:   3'- -CCCG----------CCGGCUCaGGUGcagUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 28629 0.69 0.894214
Target:  5'- cGGGCa-CCGAGUCCAuccagaacgccuuUGUCAGGGGGa -3'
miRNA:   3'- -CCCGccGGCUCAGGU-------------GCAGUUUCUUc -5'
3610 3' -54.6 NC_001650.1 + 28708 1.11 0.004028
Target:  5'- cGGGCGGCCGAGUCCACGUCAAAGAAGu -3'
miRNA:   3'- -CCCGCCGGCUCAGGUGCAGUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 29756 0.71 0.791302
Target:  5'- aGGCGGCCGcgccccaguacucugGGUCCuCGUCcguggcugggaaaaaGAGGAAGg -3'
miRNA:   3'- cCCGCCGGC---------------UCAGGuGCAG---------------UUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 31232 0.66 0.969724
Target:  5'- gGGGCgGGCCGGGaCgAgGguggggCGAAGggGg -3'
miRNA:   3'- -CCCG-CCGGCUCaGgUgCa-----GUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 35805 0.75 0.567012
Target:  5'- cGGCGGCCGuc-CCGCGcCAGGGggGc -3'
miRNA:   3'- cCCGCCGGCucaGGUGCaGUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 36505 0.71 0.819313
Target:  5'- aGGGCcaGGCUGGGgcuguaCUGCGUCAAGGAu- -3'
miRNA:   3'- -CCCG--CCGGCUCa-----GGUGCAGUUUCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.