miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3612 3' -62.6 NC_001650.1 + 31212 1.09 0.000804
Target:  5'- gCCCCAGCCAGGCCCUGCUCCUGUGCAu -3'
miRNA:   3'- -GGGGUCGGUCCGGGACGAGGACACGU- -5'
3612 3' -62.6 NC_001650.1 + 156634 0.77 0.141522
Target:  5'- uCUCCAGCUGGGCCCUGUaguccggccccucguUCCaGUGCAc -3'
miRNA:   3'- -GGGGUCGGUCCGGGACG---------------AGGaCACGU- -5'
3612 3' -62.6 NC_001650.1 + 145944 0.76 0.170345
Target:  5'- gCCC-GCCAuGGCCCUGCcgcccugccaccUCCUGUGCc -3'
miRNA:   3'- gGGGuCGGU-CCGGGACG------------AGGACACGu -5'
3612 3' -62.6 NC_001650.1 + 131545 0.75 0.206245
Target:  5'- cCCCCGGCCGGGCCCacccGCgg--GUGCGu -3'
miRNA:   3'- -GGGGUCGGUCCGGGa---CGaggaCACGU- -5'
3612 3' -62.6 NC_001650.1 + 36704 0.75 0.21619
Target:  5'- gCCCCAGCCuGGCCCUGCcCCccgGUc -3'
miRNA:   3'- -GGGGUCGGuCCGGGACGaGGacaCGu -5'
3612 3' -62.6 NC_001650.1 + 127608 0.72 0.297683
Target:  5'- gCCCAGguCCGGGCUCUcgggGCUCCUG-GCGg -3'
miRNA:   3'- gGGGUC--GGUCCGGGA----CGAGGACaCGU- -5'
3612 3' -62.6 NC_001650.1 + 132644 0.72 0.3111
Target:  5'- cCCCCAGCCAGGCggCCUGcCUCCcGa--- -3'
miRNA:   3'- -GGGGUCGGUCCG--GGAC-GAGGaCacgu -5'
3612 3' -62.6 NC_001650.1 + 111180 0.71 0.339298
Target:  5'- gUCCCAGUCAGGCCCaggcgGCUCag--GCGg -3'
miRNA:   3'- -GGGGUCGGUCCGGGa----CGAGgacaCGU- -5'
3612 3' -62.6 NC_001650.1 + 60165 0.71 0.369306
Target:  5'- aCCCUggAGCgGGGCcugaaCCUGCUCCUGUcCAa -3'
miRNA:   3'- -GGGG--UCGgUCCG-----GGACGAGGACAcGU- -5'
3612 3' -62.6 NC_001650.1 + 130474 0.71 0.374741
Target:  5'- gUCUGGCUgcacaggaccuucaAGGCCCUGCUgccCCUGUGCc -3'
miRNA:   3'- gGGGUCGG--------------UCCGGGACGA---GGACACGu -5'
3612 3' -62.6 NC_001650.1 + 58130 0.71 0.377086
Target:  5'- cCCCCGGCCGcGCCCUuC-CCcGUGCAc -3'
miRNA:   3'- -GGGGUCGGUcCGGGAcGaGGaCACGU- -5'
3612 3' -62.6 NC_001650.1 + 140092 0.7 0.409292
Target:  5'- aCCCUAGCCuGGCuuCCUGCUuCCUGg--- -3'
miRNA:   3'- -GGGGUCGGuCCG--GGACGA-GGACacgu -5'
3612 3' -62.6 NC_001650.1 + 25113 0.69 0.434542
Target:  5'- uCCCCguGGCCGGGaUCUGCUCCcgGgacgGCAg -3'
miRNA:   3'- -GGGG--UCGGUCCgGGACGAGGa-Ca---CGU- -5'
3612 3' -62.6 NC_001650.1 + 130939 0.69 0.459788
Target:  5'- aCCUCagGGCCAGGUCCuccaccaUGUUCCUGUagGCGu -3'
miRNA:   3'- -GGGG--UCGGUCCGGG-------ACGAGGACA--CGU- -5'
3612 3' -62.6 NC_001650.1 + 181828 0.69 0.460672
Target:  5'- -gCCAGCUGGGCCgaGUguacUCUGUGCAc -3'
miRNA:   3'- ggGGUCGGUCCGGgaCGa---GGACACGU- -5'
3612 3' -62.6 NC_001650.1 + 15121 0.69 0.460672
Target:  5'- -gCCAGCUGGGCCgaGUguacUCUGUGCAc -3'
miRNA:   3'- ggGGUCGGUCCGGgaCGa---GGACACGU- -5'
3612 3' -62.6 NC_001650.1 + 49496 0.69 0.469565
Target:  5'- -gCCAGCUccAGGCCCgggggcaGCUCgUUGUGCAu -3'
miRNA:   3'- ggGGUCGG--UCCGGGa------CGAG-GACACGU- -5'
3612 3' -62.6 NC_001650.1 + 130690 0.68 0.496754
Target:  5'- --gCAGCaGGGCCUUGaaggUCCUGUGCAg -3'
miRNA:   3'- gggGUCGgUCCGGGACg---AGGACACGU- -5'
3612 3' -62.6 NC_001650.1 + 53338 0.68 0.515268
Target:  5'- aCCCGGCCGGGCaga--UCCUGUGa- -3'
miRNA:   3'- gGGGUCGGUCCGggacgAGGACACgu -5'
3612 3' -62.6 NC_001650.1 + 140259 0.68 0.54354
Target:  5'- gCUCAGCCcGGCCCgggaGCUCCaccgGCGg -3'
miRNA:   3'- gGGGUCGGuCCGGGa---CGAGGaca-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.