Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3612 | 3' | -62.6 | NC_001650.1 | + | 131350 | 0.66 | 0.650246 |
Target: 5'- gCCCGGCCggGGGCCCUGUacgggacUCUG-GCc -3' miRNA: 3'- gGGGUCGG--UCCGGGACGa------GGACaCGu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 98492 | 0.67 | 0.572301 |
Target: 5'- aCCCAGCCucAGGCgCCUcGCga-UGUGCu -3' miRNA: 3'- gGGGUCGG--UCCG-GGA-CGaggACACGu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 131930 | 0.67 | 0.581972 |
Target: 5'- uUCCuGCUguGGGCCCUGCUCacgGUGg- -3' miRNA: 3'- gGGGuCGG--UCCGGGACGAGga-CACgu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 131576 | 0.67 | 0.601408 |
Target: 5'- aCCCCgaGGCCgAGGUCCUGC-CC-GUGa- -3' miRNA: 3'- -GGGG--UCGG-UCCGGGACGaGGaCACgu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 133645 | 0.67 | 0.601408 |
Target: 5'- gCCCCguuucacaacagAGCCAGGCCCcucCUCCUcccggGCGa -3' miRNA: 3'- -GGGG------------UCGGUCCGGGac-GAGGAca---CGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 156205 | 0.66 | 0.611161 |
Target: 5'- gCCCGGCCAGGgCCauCUCCgc-GCAg -3' miRNA: 3'- gGGGUCGGUCCgGGacGAGGacaCGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 24916 | 0.66 | 0.640477 |
Target: 5'- cCCCCgcgguGGCCuuuAGGaCCCUGCgggggUCCUGcUGCc -3' miRNA: 3'- -GGGG-----UCGG---UCC-GGGACG-----AGGAC-ACGu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 22149 | 0.66 | 0.650246 |
Target: 5'- aCCCCuuCaacGGCCUgcuggGCUaCCUGUGCAg -3' miRNA: 3'- -GGGGucGgu-CCGGGa----CGA-GGACACGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 88744 | 0.66 | 0.650246 |
Target: 5'- cCCCCGGCCggcaagcggggcAGGCCgacGCgCCUGcGCAu -3' miRNA: 3'- -GGGGUCGG------------UCCGGga-CGaGGACaCGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 60001 | 0.67 | 0.572301 |
Target: 5'- gCCCCGaUCAGGCCCUGCacgucCCUGa--- -3' miRNA: 3'- -GGGGUcGGUCCGGGACGa----GGACacgu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 26721 | 0.67 | 0.572301 |
Target: 5'- gCCCAucuucGCCGGGCCCgGCcuggaggggCUGUGCGc -3' miRNA: 3'- gGGGU-----CGGUCCGGGaCGag-------GACACGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 61242 | 0.67 | 0.571336 |
Target: 5'- uCCCCGGCCacguggaGGGCgguggCCUGCUCCaGccGCGc -3' miRNA: 3'- -GGGGUCGG-------UCCG-----GGACGAGGaCa-CGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 111180 | 0.71 | 0.339298 |
Target: 5'- gUCCCAGUCAGGCCCaggcgGCUCag--GCGg -3' miRNA: 3'- -GGGGUCGGUCCGGGa----CGAGgacaCGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 130474 | 0.71 | 0.374741 |
Target: 5'- gUCUGGCUgcacaggaccuucaAGGCCCUGCUgccCCUGUGCc -3' miRNA: 3'- gGGGUCGG--------------UCCGGGACGA---GGACACGu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 25113 | 0.69 | 0.434542 |
Target: 5'- uCCCCguGGCCGGGaUCUGCUCCcgGgacgGCAg -3' miRNA: 3'- -GGGG--UCGGUCCgGGACGAGGa-Ca---CGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 15121 | 0.69 | 0.460672 |
Target: 5'- -gCCAGCUGGGCCgaGUguacUCUGUGCAc -3' miRNA: 3'- ggGGUCGGUCCGGgaCGa---GGACACGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 181828 | 0.69 | 0.460672 |
Target: 5'- -gCCAGCUGGGCCgaGUguacUCUGUGCAc -3' miRNA: 3'- ggGGUCGGUCCGGgaCGa---GGACACGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 53338 | 0.68 | 0.515268 |
Target: 5'- aCCCGGCCGGGCaga--UCCUGUGa- -3' miRNA: 3'- gGGGUCGGUCCGggacgAGGACACgu -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 140259 | 0.68 | 0.54354 |
Target: 5'- gCUCAGCCcGGCCCgggaGCUCCaccgGCGg -3' miRNA: 3'- gGGGUCGGuCCGGGa---CGAGGaca-CGU- -5' |
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3612 | 3' | -62.6 | NC_001650.1 | + | 155498 | 0.67 | 0.562668 |
Target: 5'- uCCCCAGCUccccgAGGCCCagggagaaggUGCccgUCCUGUuCAg -3' miRNA: 3'- -GGGGUCGG-----UCCGGG----------ACG---AGGACAcGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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