miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3612 3' -62.6 NC_001650.1 + 1759 0.66 0.660002
Target:  5'- uCCCCauuGGCCauggAGGCCCUGUgggagGUGCc -3'
miRNA:   3'- -GGGG---UCGG----UCCGGGACGagga-CACGu -5'
3612 3' -62.6 NC_001650.1 + 6130 0.67 0.562668
Target:  5'- aCCCCauGGCCaaugaAGGCCCUgGUUgCUGgGCAg -3'
miRNA:   3'- -GGGG--UCGG-----UCCGGGA-CGAgGACaCGU- -5'
3612 3' -62.6 NC_001650.1 + 15121 0.69 0.460672
Target:  5'- -gCCAGCUGGGCCgaGUguacUCUGUGCAc -3'
miRNA:   3'- ggGGUCGGUCCGGgaCGa---GGACACGU- -5'
3612 3' -62.6 NC_001650.1 + 22149 0.66 0.650246
Target:  5'- aCCCCuuCaacGGCCUgcuggGCUaCCUGUGCAg -3'
miRNA:   3'- -GGGGucGgu-CCGGGa----CGA-GGACACGU- -5'
3612 3' -62.6 NC_001650.1 + 24490 0.65 0.66682
Target:  5'- gCCCCaacaagaaacacagGGUgGcGGUCCUGCUCCUGcccgGCu -3'
miRNA:   3'- -GGGG--------------UCGgU-CCGGGACGAGGACa---CGu -5'
3612 3' -62.6 NC_001650.1 + 24916 0.66 0.640477
Target:  5'- cCCCCgcgguGGCCuuuAGGaCCCUGCgggggUCCUGcUGCc -3'
miRNA:   3'- -GGGG-----UCGG---UCC-GGGACG-----AGGAC-ACGu -5'
3612 3' -62.6 NC_001650.1 + 25113 0.69 0.434542
Target:  5'- uCCCCguGGCCGGGaUCUGCUCCcgGgacgGCAg -3'
miRNA:   3'- -GGGG--UCGGUCCgGGACGAGGa-Ca---CGU- -5'
3612 3' -62.6 NC_001650.1 + 26721 0.67 0.572301
Target:  5'- gCCCAucuucGCCGGGCCCgGCcuggaggggCUGUGCGc -3'
miRNA:   3'- gGGGU-----CGGUCCGGGaCGag-------GACACGU- -5'
3612 3' -62.6 NC_001650.1 + 26840 0.66 0.630701
Target:  5'- aCCgUGGCCGGGUCCaGCuUCUUGUGg- -3'
miRNA:   3'- -GGgGUCGGUCCGGGaCG-AGGACACgu -5'
3612 3' -62.6 NC_001650.1 + 26935 0.66 0.640477
Target:  5'- gCCCCuccaGGCCGGGCCCgGCgaagaugggCUUGaaGCAg -3'
miRNA:   3'- -GGGG----UCGGUCCGGGaCGa--------GGACa-CGU- -5'
3612 3' -62.6 NC_001650.1 + 27684 0.66 0.611161
Target:  5'- gCCCCGGUUGGaGgCCUGCUUCUGgacccggGCc -3'
miRNA:   3'- -GGGGUCGGUC-CgGGACGAGGACa------CGu -5'
3612 3' -62.6 NC_001650.1 + 31212 1.09 0.000804
Target:  5'- gCCCCAGCCAGGCCCUGCUCCUGUGCAu -3'
miRNA:   3'- -GGGGUCGGUCCGGGACGAGGACACGU- -5'
3612 3' -62.6 NC_001650.1 + 36704 0.75 0.21619
Target:  5'- gCCCCAGCCuGGCCCUGCcCCccgGUc -3'
miRNA:   3'- -GGGGUCGGuCCGGGACGaGGacaCGu -5'
3612 3' -62.6 NC_001650.1 + 45377 0.66 0.659027
Target:  5'- aCCCGGCCcaGCCCguacaGUUCCccuagggUGUGCAg -3'
miRNA:   3'- gGGGUCGGucCGGGa----CGAGG-------ACACGU- -5'
3612 3' -62.6 NC_001650.1 + 48315 0.66 0.644385
Target:  5'- cCCCUGGCCAuccugcuguacaccGCCCUGCaCCUGUccacGCAc -3'
miRNA:   3'- -GGGGUCGGUc-------------CGGGACGaGGACA----CGU- -5'
3612 3' -62.6 NC_001650.1 + 49496 0.69 0.469565
Target:  5'- -gCCAGCUccAGGCCCgggggcaGCUCgUUGUGCAu -3'
miRNA:   3'- ggGGUCGG--UCCGGGa------CGAG-GACACGU- -5'
3612 3' -62.6 NC_001650.1 + 53338 0.68 0.515268
Target:  5'- aCCCGGCCGGGCaga--UCCUGUGa- -3'
miRNA:   3'- gGGGUCGGUCCGggacgAGGACACgu -5'
3612 3' -62.6 NC_001650.1 + 58130 0.71 0.377086
Target:  5'- cCCCCGGCCGcGCCCUuC-CCcGUGCAc -3'
miRNA:   3'- -GGGGUCGGUcCGGGAcGaGGaCACGU- -5'
3612 3' -62.6 NC_001650.1 + 59197 0.66 0.630701
Target:  5'- uCUCCAGCUccuGuCCCUGCUCCUcccgggcccGUGCc -3'
miRNA:   3'- -GGGGUCGGu--CcGGGACGAGGA---------CACGu -5'
3612 3' -62.6 NC_001650.1 + 60001 0.67 0.572301
Target:  5'- gCCCCGaUCAGGCCCUGCacgucCCUGa--- -3'
miRNA:   3'- -GGGGUcGGUCCGGGACGa----GGACacgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.