miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3612 5' -54.3 NC_001650.1 + 138875 0.66 0.95976
Target:  5'- aUGCugGCAGACAGg--GGCCAUGcuggcagacagGGGAu -3'
miRNA:   3'- -ACG--CGUUUGUCgaaCCGGUACa----------CCCU- -5'
3612 5' -54.3 NC_001650.1 + 24069 0.66 0.95976
Target:  5'- gGCcuGUggGCGGCccuggccgagaUGGCCAUGgcgGGGAu -3'
miRNA:   3'- aCG--CGuuUGUCGa----------ACCGGUACa--CCCU- -5'
3612 5' -54.3 NC_001650.1 + 21755 0.66 0.95976
Target:  5'- gGgGCAgcAACAGCUgcgGcGCCcccugGUGGGGg -3'
miRNA:   3'- aCgCGU--UUGUCGAa--C-CGGua---CACCCU- -5'
3612 5' -54.3 NC_001650.1 + 72699 0.66 0.958653
Target:  5'- cUGgGCAGGCGGUcgccacccacgagagGGCCAagcugGUGGGGc -3'
miRNA:   3'- -ACgCGUUUGUCGaa-------------CCGGUa----CACCCU- -5'
3612 5' -54.3 NC_001650.1 + 15264 0.66 0.955991
Target:  5'- gGUuCAAcaAGCgagUGGCCAgGUGGGAg -3'
miRNA:   3'- aCGcGUUugUCGa--ACCGGUaCACCCU- -5'
3612 5' -54.3 NC_001650.1 + 181971 0.66 0.955991
Target:  5'- gGUuCAAcaAGCgagUGGCCAgGUGGGAg -3'
miRNA:   3'- aCGcGUUugUCGa--ACCGGUaCACCCU- -5'
3612 5' -54.3 NC_001650.1 + 69225 0.66 0.955991
Target:  5'- cGCGCGGGC-GCUggaGGCCGg--GGGc -3'
miRNA:   3'- aCGCGUUUGuCGAa--CCGGUacaCCCu -5'
3612 5' -54.3 NC_001650.1 + 129473 0.66 0.955991
Target:  5'- gGCGCccuuGGCGGCggagcgGGCCAccaGGGAg -3'
miRNA:   3'- aCGCGu---UUGUCGaa----CCGGUacaCCCU- -5'
3612 5' -54.3 NC_001650.1 + 156414 0.66 0.955991
Target:  5'- cUGCGCGgaGAUGGCccUGGCCGggcaGUGcGGGg -3'
miRNA:   3'- -ACGCGU--UUGUCGa-ACCGGUa---CAC-CCU- -5'
3612 5' -54.3 NC_001650.1 + 68643 0.66 0.950743
Target:  5'- gUGCGCcAGCGGCacGGCCAUcaacaugaacaucaGcgGGGAc -3'
miRNA:   3'- -ACGCGuUUGUCGaaCCGGUA--------------Ca-CCCU- -5'
3612 5' -54.3 NC_001650.1 + 72933 0.66 0.94775
Target:  5'- aGCGUcugccccacCAGCUUGGCCcucucGUGGGu -3'
miRNA:   3'- aCGCGuuu------GUCGAACCGGua---CACCCu -5'
3612 5' -54.3 NC_001650.1 + 48108 0.67 0.933582
Target:  5'- gGUGUAcAGCAGgaUGGCCAg--GGGGu -3'
miRNA:   3'- aCGCGU-UUGUCgaACCGGUacaCCCU- -5'
3612 5' -54.3 NC_001650.1 + 105467 0.67 0.933582
Target:  5'- cGCGCGagagcuagcccGACGGUgagGGUUacagGUGUGGGAc -3'
miRNA:   3'- aCGCGU-----------UUGUCGaa-CCGG----UACACCCU- -5'
3612 5' -54.3 NC_001650.1 + 51437 0.67 0.933072
Target:  5'- cGCGCuacagggaGAACcugAGCgUGGCCGUcacggugGUGGGAg -3'
miRNA:   3'- aCGCG--------UUUG---UCGaACCGGUA-------CACCCU- -5'
3612 5' -54.3 NC_001650.1 + 79718 0.67 0.933072
Target:  5'- aGCGCGGGCacguagGGCUcUGGgCAgacuuccuaaaccUGUGGGAa -3'
miRNA:   3'- aCGCGUUUG------UCGA-ACCgGU-------------ACACCCU- -5'
3612 5' -54.3 NC_001650.1 + 37586 0.67 0.931526
Target:  5'- gGUGCGGGCGGCggccgagcgccugUGcGCCAUGaGGGu -3'
miRNA:   3'- aCGCGUUUGUCGa------------AC-CGGUACaCCCu -5'
3612 5' -54.3 NC_001650.1 + 53722 0.67 0.922349
Target:  5'- aGCGCGgccgaGAgGGCUcUGGaCCAaucagauUGUGGGAu -3'
miRNA:   3'- aCGCGU-----UUgUCGA-ACC-GGU-------ACACCCU- -5'
3612 5' -54.3 NC_001650.1 + 140938 0.67 0.922349
Target:  5'- aGCGCGgcugaGAgGGCUcUGGaCCAaugagauUGUGGGAu -3'
miRNA:   3'- aCGCGU-----UUgUCGA-ACC-GGU-------ACACCCU- -5'
3612 5' -54.3 NC_001650.1 + 126751 0.67 0.91125
Target:  5'- gGgGaCGAGCGGCgaggGGCCcgG-GGGAa -3'
miRNA:   3'- aCgC-GUUUGUCGaa--CCGGuaCaCCCU- -5'
3612 5' -54.3 NC_001650.1 + 118236 0.68 0.905054
Target:  5'- aGCGCucgggguucucGGGCAGCUUGGCCGcca-GGAa -3'
miRNA:   3'- aCGCG-----------UUUGUCGAACCGGUacacCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.