miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3622 3' -51.8 NC_001650.1 + 37473 1.11 0.005519
Target:  5'- gAUGACCUUAAAACUGGCAUCGGGGGCg -3'
miRNA:   3'- -UACUGGAAUUUUGACCGUAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 90255 0.8 0.424541
Target:  5'- -gGGCCUcAGgcagucAACgGGCAUCGGGGGCg -3'
miRNA:   3'- uaCUGGAaUU------UUGaCCGUAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 89075 0.77 0.582369
Target:  5'- gGUGACCgc-GGACUGGCucgucgCGGGGGa -3'
miRNA:   3'- -UACUGGaauUUUGACCGua----GCCCCCg -5'
3622 3' -51.8 NC_001650.1 + 144085 0.75 0.718121
Target:  5'- gAUGACCUUAGAGgU-GCAUaUGGGGGUg -3'
miRNA:   3'- -UACUGGAAUUUUgAcCGUA-GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 133709 0.74 0.748344
Target:  5'- --uGCCUcugAAAACUGGgAgCGGGGGCg -3'
miRNA:   3'- uacUGGAa--UUUUGACCgUaGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 105314 0.73 0.774725
Target:  5'- -aGACCUUGAGgcuuuuuuuuaguuGCugcaaUGGCAUCuGGGGGUg -3'
miRNA:   3'- uaCUGGAAUUU--------------UG-----ACCGUAG-CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 35693 0.73 0.777599
Target:  5'- cUGGCCggGGGGCUcacGGCcgCGGGGuGCg -3'
miRNA:   3'- uACUGGaaUUUUGA---CCGuaGCCCC-CG- -5'
3622 3' -51.8 NC_001650.1 + 85967 0.73 0.814635
Target:  5'- -gGACCcgcucGAGugUaGCAUCGGGGGCc -3'
miRNA:   3'- uaCUGGaa---UUUugAcCGUAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 61506 0.72 0.823479
Target:  5'- cUGGCCgc----CU-GCAUCGGGGGCg -3'
miRNA:   3'- uACUGGaauuuuGAcCGUAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 32138 0.72 0.83214
Target:  5'- -aGGCCUcugugUAAAACaagacaagaugGGgGUCGGGGGCg -3'
miRNA:   3'- uaCUGGA-----AUUUUGa----------CCgUAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 134314 0.72 0.83214
Target:  5'- uUGAUCUUGGGA--GGC-UUGGGGGCa -3'
miRNA:   3'- uACUGGAAUUUUgaCCGuAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 129595 0.72 0.848876
Target:  5'- --cGCCUUcgacAACaUGGCGuUCGGGGGCa -3'
miRNA:   3'- uacUGGAAuu--UUG-ACCGU-AGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 36009 0.72 0.856937
Target:  5'- cGUGAUCUggAAGGC-GGgGUCGGGGGa -3'
miRNA:   3'- -UACUGGAa-UUUUGaCCgUAGCCCCCg -5'
3622 3' -51.8 NC_001650.1 + 108076 0.72 0.864783
Target:  5'- -aGGCUguuuGACgGGUcgCGGGGGCg -3'
miRNA:   3'- uaCUGGaauuUUGaCCGuaGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 129654 0.71 0.886968
Target:  5'- uUGGCCgcGAAcuccCUGGCcuccucGUUGGGGGCg -3'
miRNA:   3'- uACUGGaaUUUu---GACCG------UAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 122120 0.71 0.886968
Target:  5'- uUGGCC--AGGGCggggucGGC-UCGGGGGCg -3'
miRNA:   3'- uACUGGaaUUUUGa-----CCGuAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 122213 0.71 0.886968
Target:  5'- -gGACCgcggcgagGGAGCUGGUgcccgaggcCGGGGGCg -3'
miRNA:   3'- uaCUGGaa------UUUUGACCGua-------GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 24025 0.71 0.886968
Target:  5'- -gGGCCaaGAGGCUGGcCGUCucGGGGCa -3'
miRNA:   3'- uaCUGGaaUUUUGACC-GUAGc-CCCCG- -5'
3622 3' -51.8 NC_001650.1 + 77169 0.71 0.893895
Target:  5'- -aGGCCUcGGGcACgGGCAU-GGGGGCg -3'
miRNA:   3'- uaCUGGAaUUU-UGaCCGUAgCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 18131 0.71 0.90058
Target:  5'- -cGGCggUGGGGgUGGUGUgGGGGGCa -3'
miRNA:   3'- uaCUGgaAUUUUgACCGUAgCCCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.