miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3622 3' -51.8 NC_001650.1 + 7621 0.66 0.992101
Target:  5'- -gGGCCUugggcaaUAAAGCccgUGGCccaaUGGGGGCu -3'
miRNA:   3'- uaCUGGA-------AUUUUG---ACCGua--GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 7733 0.66 0.992101
Target:  5'- -gGGCCUugggcaaUAAAGCccgUGGCccaaUGGGGGCu -3'
miRNA:   3'- uaCUGGA-------AUUUUG---ACCGua--GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 7785 0.7 0.930274
Target:  5'- aAUGGCCUgugGuuGCcgGGCAgacuaGGGGGUg -3'
miRNA:   3'- -UACUGGAa--UuuUGa-CCGUag---CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 8282 0.68 0.964835
Target:  5'- cAUGGCCU-----CUGGUuaauuaggCGGGGGCc -3'
miRNA:   3'- -UACUGGAauuuuGACCGua------GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 12200 0.67 0.975016
Target:  5'- -aGGCCggugGuuGCUGGCuUCcaucaaaucaugcagGGGGGCg -3'
miRNA:   3'- uaCUGGaa--UuuUGACCGuAG---------------CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 13663 0.67 0.976561
Target:  5'- cUGGCCcUGAAAaaGGUgaggAUgGGGGGCu -3'
miRNA:   3'- uACUGGaAUUUUgaCCG----UAgCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 18131 0.71 0.90058
Target:  5'- -cGGCggUGGGGgUGGUGUgGGGGGCa -3'
miRNA:   3'- uaCUGgaAUUUUgACCGUAgCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 21663 0.68 0.957643
Target:  5'- cUGACCagcgGGGACgacGGCG-CGGGGGg -3'
miRNA:   3'- uACUGGaa--UUUUGa--CCGUaGCCCCCg -5'
3622 3' -51.8 NC_001650.1 + 22727 0.66 0.986835
Target:  5'- gGUGGCCccggUGAAGCUguggGGCcUCGaggcGGGGCc -3'
miRNA:   3'- -UACUGGa---AUUUUGA----CCGuAGC----CCCCG- -5'
3622 3' -51.8 NC_001650.1 + 23086 0.66 0.989797
Target:  5'- aAUGcuCCUguucauGCUGGCGUuccCGGGGGa -3'
miRNA:   3'- -UACu-GGAauuu--UGACCGUA---GCCCCCg -5'
3622 3' -51.8 NC_001650.1 + 23306 0.7 0.913209
Target:  5'- uGUGcAUCUUGAAGCacaGGUAUCuGGGGCc -3'
miRNA:   3'- -UAC-UGGAAUUUUGa--CCGUAGcCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 23429 0.66 0.991068
Target:  5'- -gGACCUcccg---GGCGUCcgagGGGGGCc -3'
miRNA:   3'- uaCUGGAauuuugaCCGUAG----CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 23730 0.68 0.97083
Target:  5'- cGUGACCUc----CUGcGCGUCcucgcggcgcgcgGGGGGCg -3'
miRNA:   3'- -UACUGGAauuuuGAC-CGUAG-------------CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 24025 0.71 0.886968
Target:  5'- -gGGCCaaGAGGCUGGcCGUCucGGGGCa -3'
miRNA:   3'- uaCUGGaaUUUUGACC-GUAGc-CCCCG- -5'
3622 3' -51.8 NC_001650.1 + 30449 0.67 0.981207
Target:  5'- gGUGGCCUuucUGGGGC-GGCucaGGGGGg -3'
miRNA:   3'- -UACUGGA---AUUUUGaCCGuagCCCCCg -5'
3622 3' -51.8 NC_001650.1 + 31014 0.68 0.957643
Target:  5'- -gGGCCU---GGCUGGgGcgGGGGGCg -3'
miRNA:   3'- uaCUGGAauuUUGACCgUagCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 31237 0.66 0.991068
Target:  5'- -gGGCCg--GGACgaggguggGGCGaaGGGGGCg -3'
miRNA:   3'- uaCUGGaauUUUGa-------CCGUagCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 32138 0.72 0.83214
Target:  5'- -aGGCCUcugugUAAAACaagacaagaugGGgGUCGGGGGCg -3'
miRNA:   3'- uaCUGGA-----AUUUUGa----------CCgUAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 35693 0.73 0.777599
Target:  5'- cUGGCCggGGGGCUcacGGCcgCGGGGuGCg -3'
miRNA:   3'- uACUGGaaUUUUGA---CCGuaGCCCC-CG- -5'
3622 3' -51.8 NC_001650.1 + 36009 0.72 0.856937
Target:  5'- cGUGAUCUggAAGGC-GGgGUCGGGGGa -3'
miRNA:   3'- -UACUGGAa-UUUUGaCCgUAGCCCCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.