miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3622 3' -51.8 NC_001650.1 + 76691 0.69 0.938937
Target:  5'- cGUGGCCUUGucggcguggugcagGAACUugaccGGCA--GGGGGCu -3'
miRNA:   3'- -UACUGGAAU--------------UUUGA-----CCGUagCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 88704 0.71 0.90058
Target:  5'- -gGGCgaUGGAGCgggGGCGggaGGGGGCu -3'
miRNA:   3'- uaCUGgaAUUUUGa--CCGUag-CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 18131 0.71 0.90058
Target:  5'- -cGGCggUGGGGgUGGUGUgGGGGGCa -3'
miRNA:   3'- uaCUGgaAUUUUgACCGUAgCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 131541 0.7 0.907019
Target:  5'- cGUGGCCgcccgGGGGCUGGa--CGcGGGGCg -3'
miRNA:   3'- -UACUGGaa---UUUUGACCguaGC-CCCCG- -5'
3622 3' -51.8 NC_001650.1 + 88806 0.7 0.924838
Target:  5'- -gGACUgc-GAGCUGGCGUgCGcGGGCg -3'
miRNA:   3'- uaCUGGaauUUUGACCGUA-GCcCCCG- -5'
3622 3' -51.8 NC_001650.1 + 91127 0.7 0.924838
Target:  5'- -aGGCgCUcgGAGACUggguccucccGGCcgCGGGGGCu -3'
miRNA:   3'- uaCUG-GAa-UUUUGA----------CCGuaGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 100720 0.7 0.924838
Target:  5'- uUGGCCUUGGAgagggaggGgUGGUGcCGGGGGUc -3'
miRNA:   3'- uACUGGAAUUU--------UgACCGUaGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 38307 0.7 0.924838
Target:  5'- cGUGGCC---AAACggcGGUGUgGGGGGCu -3'
miRNA:   3'- -UACUGGaauUUUGa--CCGUAgCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 53373 0.7 0.924838
Target:  5'- cGUGACUcagUGGGAUaGGCGcgCGGGGGUu -3'
miRNA:   3'- -UACUGGa--AUUUUGaCCGUa-GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 122213 0.71 0.886968
Target:  5'- -gGACCgcggcgagGGAGCUGGUgcccgaggcCGGGGGCg -3'
miRNA:   3'- uaCUGGaa------UUUUGACCGua-------GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 122120 0.71 0.886968
Target:  5'- uUGGCC--AGGGCggggucGGC-UCGGGGGCg -3'
miRNA:   3'- uACUGGaaUUUUGa-----CCGuAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 24025 0.71 0.886968
Target:  5'- -gGGCCaaGAGGCUGGcCGUCucGGGGCa -3'
miRNA:   3'- uaCUGGaaUUUUGACC-GUAGc-CCCCG- -5'
3622 3' -51.8 NC_001650.1 + 133709 0.74 0.748344
Target:  5'- --uGCCUcugAAAACUGGgAgCGGGGGCg -3'
miRNA:   3'- uacUGGAa--UUUUGACCgUaGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 35693 0.73 0.777599
Target:  5'- cUGGCCggGGGGCUcacGGCcgCGGGGuGCg -3'
miRNA:   3'- uACUGGaaUUUUGA---CCGuaGCCCC-CG- -5'
3622 3' -51.8 NC_001650.1 + 85967 0.73 0.814635
Target:  5'- -gGACCcgcucGAGugUaGCAUCGGGGGCc -3'
miRNA:   3'- uaCUGGaa---UUUugAcCGUAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 61506 0.72 0.823479
Target:  5'- cUGGCCgc----CU-GCAUCGGGGGCg -3'
miRNA:   3'- uACUGGaauuuuGAcCGUAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 32138 0.72 0.83214
Target:  5'- -aGGCCUcugugUAAAACaagacaagaugGGgGUCGGGGGCg -3'
miRNA:   3'- uaCUGGA-----AUUUUGa----------CCgUAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 129595 0.72 0.848876
Target:  5'- --cGCCUUcgacAACaUGGCGuUCGGGGGCa -3'
miRNA:   3'- uacUGGAAuu--UUG-ACCGU-AGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 36009 0.72 0.856937
Target:  5'- cGUGAUCUggAAGGC-GGgGUCGGGGGa -3'
miRNA:   3'- -UACUGGAa-UUUUGaCCgUAGCCCCCg -5'
3622 3' -51.8 NC_001650.1 + 108076 0.72 0.864783
Target:  5'- -aGGCUguuuGACgGGUcgCGGGGGCg -3'
miRNA:   3'- uaCUGGaauuUUGaCCGuaGCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.