miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3622 5' -54.7 NC_001650.1 + 155079 0.66 0.969261
Target:  5'- cCUGCCGUCCC----UGga-GCaCAGCCc -3'
miRNA:   3'- -GGCGGCAGGGuuauACagaCG-GUCGG- -5'
3622 5' -54.7 NC_001650.1 + 834 0.66 0.962623
Target:  5'- aCCGCaccccCCCGGg--GUCUGCCuggcaacAGCCu -3'
miRNA:   3'- -GGCGgca--GGGUUauaCAGACGG-------UCGG- -5'
3622 5' -54.7 NC_001650.1 + 167541 0.66 0.962623
Target:  5'- aCCGCaccccCCCGGg--GUCUGCCuggcaacAGCCu -3'
miRNA:   3'- -GGCGgca--GGGUUauaCAGACGG-------UCGG- -5'
3622 5' -54.7 NC_001650.1 + 61234 0.66 0.961943
Target:  5'- cCCGcCCGUCCCcggccacguggaggGcgGUGgcCUGCucCAGCCg -3'
miRNA:   3'- -GGC-GGCAGGG--------------UuaUACa-GACG--GUCGG- -5'
3622 5' -54.7 NC_001650.1 + 75709 0.66 0.959494
Target:  5'- gCGCCGUCagcgCCAGcGUGUUgggGCUcgucgGGCCg -3'
miRNA:   3'- gGCGGCAG----GGUUaUACAGa--CGG-----UCGG- -5'
3622 5' -54.7 NC_001650.1 + 73472 0.66 0.959494
Target:  5'- -aGCUGUagCCCAGgcugGUGUUgagggugGCCAGCUc -3'
miRNA:   3'- ggCGGCA--GGGUUa---UACAGa------CGGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 41208 0.66 0.959494
Target:  5'- aCCGCCGUCCaagacaccaugCAGcUGUGUagUUGCCuaggAGCUg -3'
miRNA:   3'- -GGCGGCAGG-----------GUU-AUACA--GACGG----UCGG- -5'
3622 5' -54.7 NC_001650.1 + 101256 0.66 0.959494
Target:  5'- gCUGCUGcUCCCAGauaaacAUGcccuacgaucUCUGCCAGCa -3'
miRNA:   3'- -GGCGGC-AGGGUUa-----UAC----------AGACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 21866 0.66 0.955811
Target:  5'- gCCGUCGUCCCcgcugGUCagguaggaccCCAGCCc -3'
miRNA:   3'- -GGCGGCAGGGuuauaCAGac--------GGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 82629 0.67 0.951504
Target:  5'- aCgGCCGUCCC-------CUGCCAGUUg -3'
miRNA:   3'- -GgCGGCAGGGuuauacaGACGGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 106616 0.67 0.947778
Target:  5'- aCCGCUGUCUCcccuGUAUccUCUGUCAGUg -3'
miRNA:   3'- -GGCGGCAGGGu---UAUAc-AGACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 74831 0.67 0.943421
Target:  5'- cCUGCUG-CCCAAcucccUGgcaggcucCUGCCGGCCa -3'
miRNA:   3'- -GGCGGCaGGGUUau---ACa-------GACGGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 31064 0.67 0.942973
Target:  5'- gCgGCCGUCCUccuccucgaagauGGUGUGcCccGCCAGCa -3'
miRNA:   3'- -GgCGGCAGGG-------------UUAUACaGa-CGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 78391 0.67 0.938834
Target:  5'- gUCGCaaaaGUCCUgGAUGuUGUCUGCCAcGCa -3'
miRNA:   3'- -GGCGg---CAGGG-UUAU-ACAGACGGU-CGg -5'
3622 5' -54.7 NC_001650.1 + 24255 0.67 0.936934
Target:  5'- gCCcCCGUCCCcgac-GUCgugccccgagacgGCCAGCCu -3'
miRNA:   3'- -GGcGGCAGGGuuauaCAGa------------CGGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 22923 0.68 0.928962
Target:  5'- aCCGCCcUCCCGcccgccacguugAUGaagGUCUGgaCGGCCg -3'
miRNA:   3'- -GGCGGcAGGGU------------UAUa--CAGACg-GUCGG- -5'
3622 5' -54.7 NC_001650.1 + 69656 0.68 0.912402
Target:  5'- gUGCCGggCCCGGgccGUGuUCUGCCAcucccugaGCCu -3'
miRNA:   3'- gGCGGCa-GGGUUa--UAC-AGACGGU--------CGG- -5'
3622 5' -54.7 NC_001650.1 + 138757 0.68 0.906417
Target:  5'- uCUGCCagcauggCCCc---UGUCUGCCAGCa -3'
miRNA:   3'- -GGCGGca-----GGGuuauACAGACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 138663 0.68 0.906417
Target:  5'- uCUGCCagcauggCCCc---UGUCUGCCAGCa -3'
miRNA:   3'- -GGCGGca-----GGGuuauACAGACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 170423 0.69 0.880208
Target:  5'- gCCGCCauGUUCUAA-AUGcCUGCCAGgCa -3'
miRNA:   3'- -GGCGG--CAGGGUUaUACaGACGGUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.