miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
365 3' -59.7 AC_000011.1 + 20643 0.72 0.151221
Target:  5'- uGCGGUCCuuguagcccuCGGGCACGuagAAGCccugGUAGCc -3'
miRNA:   3'- gCGCCAGGu---------GCCCGUGC---UUCG----CGUCG- -5'
365 3' -59.7 AC_000011.1 + 25025 0.67 0.314411
Target:  5'- uCGCGGaaggUCAgcGGCACGAAGUccgaggGCAGCg -3'
miRNA:   3'- -GCGCCa---GGUgcCCGUGCUUCG------CGUCG- -5'
365 3' -59.7 AC_000011.1 + 21571 0.67 0.338176
Target:  5'- gGCGGUCgGgccaGuGCACGAAGCgugcaggaacauGCAGCa -3'
miRNA:   3'- gCGCCAGgUg---CcCGUGCUUCG------------CGUCG- -5'
365 3' -59.7 AC_000011.1 + 12400 0.66 0.398563
Target:  5'- uGCGGUCCAgguUGGucuGCACGuuGGUGCuGUu -3'
miRNA:   3'- gCGCCAGGU---GCC---CGUGCu-UCGCGuCG- -5'
365 3' -59.7 AC_000011.1 + 11286 0.71 0.178017
Target:  5'- cCGCGG-CCACGuGCGCGc-GCGCGGg -3'
miRNA:   3'- -GCGCCaGGUGCcCGUGCuuCGCGUCg -5'
365 3' -59.7 AC_000011.1 + 18553 1.11 0.00015
Target:  5'- uCGCGGUCCACGGGCACGAAGCGCAGCg -3'
miRNA:   3'- -GCGCCAGGUGCCCGUGCUUCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 21464 0.79 0.044535
Target:  5'- aGCGGUCCucgguggccaGGGCGCuGcGGCGCAGCa -3'
miRNA:   3'- gCGCCAGGug--------CCCGUG-CuUCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 20682 0.74 0.117862
Target:  5'- gGCGGcUCAUGGGCugGAAGuUGCGGa -3'
miRNA:   3'- gCGCCaGGUGCCCGugCUUC-GCGUCg -5'
365 3' -59.7 AC_000011.1 + 24019 0.73 0.1212
Target:  5'- gGC-GUCggCGCGGGUGCGGuuGGCGCGGCa -3'
miRNA:   3'- gCGcCAG--GUGCCCGUGCU--UCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 9446 0.68 0.301514
Target:  5'- uGCGGcCCcgcgaggACGGGCGCGccgucaccGagaccaugcgacgccGGCGCGGCg -3'
miRNA:   3'- gCGCCaGG-------UGCCCGUGC--------U---------------UCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 34292 0.68 0.29193
Target:  5'- cCGgGGUCUcuucgcugcaugGCGGGC--GggGCGguGCu -3'
miRNA:   3'- -GCgCCAGG------------UGCCCGugCuuCGCguCG- -5'
365 3' -59.7 AC_000011.1 + 34342 0.68 0.270727
Target:  5'- aGauGaUCCACGGGUACG-AGCGguGg -3'
miRNA:   3'- gCgcC-AGGUGCCCGUGCuUCGCguCg -5'
365 3' -59.7 AC_000011.1 + 13427 0.72 0.151221
Target:  5'- gGCGG-CCuCGGGCAcCGccGCgGCAGCa -3'
miRNA:   3'- gCGCCaGGuGCCCGU-GCuuCG-CGUCG- -5'
365 3' -59.7 AC_000011.1 + 13095 0.68 0.29193
Target:  5'- gCGCGGUCaugucgaGCGcGGCGCuGGGgGUGGCc -3'
miRNA:   3'- -GCGCCAGg------UGC-CCGUGcUUCgCGUCG- -5'
365 3' -59.7 AC_000011.1 + 17856 0.72 0.151221
Target:  5'- uGCGGcaucUCCACGGaGC-CGgcGgGCGGCa -3'
miRNA:   3'- gCGCC----AGGUGCC-CGuGCuuCgCGUCG- -5'
365 3' -59.7 AC_000011.1 + 16076 0.71 0.182874
Target:  5'- gGCGGgugCgCACGGGCACGcgcacaccGGUgGCGGCg -3'
miRNA:   3'- gCGCCa--G-GUGCCCGUGCu-------UCG-CGUCG- -5'
365 3' -59.7 AC_000011.1 + 19868 0.68 0.299281
Target:  5'- aCGuuGUCCAUGGGauccaGCGAccAGCGC-GCc -3'
miRNA:   3'- -GCgcCAGGUGCCCg----UGCU--UCGCGuCG- -5'
365 3' -59.7 AC_000011.1 + 15757 0.67 0.330112
Target:  5'- gGC-GUCCACGGuGgagACG-GGCGCGGCg -3'
miRNA:   3'- gCGcCAGGUGCC-Cg--UGCuUCGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 18016 0.72 0.155418
Target:  5'- gGUGG-CCAgGGGCGCGAugggccGCGUGGUg -3'
miRNA:   3'- gCGCCaGGUgCCCGUGCUu-----CGCGUCG- -5'
365 3' -59.7 AC_000011.1 + 25333 0.71 0.182874
Target:  5'- gGUaGUCCuCGGGCACGAAcuuGCGCAaGUa -3'
miRNA:   3'- gCGcCAGGuGCCCGUGCUU---CGCGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.