miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3657 5' -62.8 NC_001650.1 + 54394 1.09 0.000958
Target:  5'- gGCCCGGGAGCUCCACCGGCGACUGGAc -3'
miRNA:   3'- -CGGGCCCUCGAGGUGGCCGCUGACCU- -5'
3657 5' -62.8 NC_001650.1 + 140268 0.92 0.016116
Target:  5'- gGCCCGGGAGCUCCACCGGCGGauugaauccucgauuCUGGc -3'
miRNA:   3'- -CGGGCCCUCGAGGUGGCCGCU---------------GACCu -5'
3657 5' -62.8 NC_001650.1 + 165024 0.78 0.144313
Target:  5'- uGCCgCGGGGGUcugcucgcggCCGCCGGCGGCUGaGAg -3'
miRNA:   3'- -CGG-GCCCUCGa---------GGUGGCCGCUGAC-CU- -5'
3657 5' -62.8 NC_001650.1 + 50276 0.76 0.187549
Target:  5'- cGCCCGGGAGCg--GgCGGCGGCgggGGAg -3'
miRNA:   3'- -CGGGCCCUCGaggUgGCCGCUGa--CCU- -5'
3657 5' -62.8 NC_001650.1 + 66425 0.74 0.252958
Target:  5'- gGCCCGuGGAGCccgccgCCACCGGC--UUGGAg -3'
miRNA:   3'- -CGGGC-CCUCGa-----GGUGGCCGcuGACCU- -5'
3657 5' -62.8 NC_001650.1 + 111409 0.74 0.270499
Target:  5'- uGCCUGGGGGCgcgggCCGCCugagccgccugGGCcuGACUGGGa -3'
miRNA:   3'- -CGGGCCCUCGa----GGUGG-----------CCG--CUGACCU- -5'
3657 5' -62.8 NC_001650.1 + 52598 0.73 0.295391
Target:  5'- cGCCCGGGAGCUcugggaugggggCCACUGGCccggGGGu -3'
miRNA:   3'- -CGGGCCCUCGA------------GGUGGCCGcugaCCU- -5'
3657 5' -62.8 NC_001650.1 + 132600 0.72 0.342443
Target:  5'- cGCCCGGccaggccgucaaaGAGCUCgGCCgagGGCGACaGGGu -3'
miRNA:   3'- -CGGGCC-------------CUCGAGgUGG---CCGCUGaCCU- -5'
3657 5' -62.8 NC_001650.1 + 129612 0.71 0.380554
Target:  5'- cGUUCGGGGGCaUCACgGGCGAggaCUGGGc -3'
miRNA:   3'- -CGGGCCCUCGaGGUGgCCGCU---GACCU- -5'
3657 5' -62.8 NC_001650.1 + 23232 0.71 0.396255
Target:  5'- cGCCCGGGAGgUCCuGCUGGgGAucCUGaGGc -3'
miRNA:   3'- -CGGGCCCUCgAGG-UGGCCgCU--GAC-CU- -5'
3657 5' -62.8 NC_001650.1 + 27927 0.7 0.419747
Target:  5'- aGCCCGaguuguuGGAGCUCUuCUGGUG-CUGGGc -3'
miRNA:   3'- -CGGGC-------CCUCGAGGuGGCCGCuGACCU- -5'
3657 5' -62.8 NC_001650.1 + 22631 0.7 0.419747
Target:  5'- cGCCCccagcgcgcgGGGGGCgcguacgCCucgcacgacagcgGCCGGCGGCUGGc -3'
miRNA:   3'- -CGGG----------CCCUCGa------GG-------------UGGCCGCUGACCu -5'
3657 5' -62.8 NC_001650.1 + 156459 0.7 0.419747
Target:  5'- aGCCUGGGGGCagaagugUCCacccuggccuuGCCGGCGAa-GGAg -3'
miRNA:   3'- -CGGGCCCUCG-------AGG-----------UGGCCGCUgaCCU- -5'
3657 5' -62.8 NC_001650.1 + 85795 0.7 0.463029
Target:  5'- uGCCCGGGGGCacguacUCCACCGcGgGcCUGu- -3'
miRNA:   3'- -CGGGCCCUCG------AGGUGGC-CgCuGACcu -5'
3657 5' -62.8 NC_001650.1 + 111076 0.69 0.480633
Target:  5'- cCCCaGGGGCUCCAgCGGCGcCaGGc -3'
miRNA:   3'- cGGGcCCUCGAGGUgGCCGCuGaCCu -5'
3657 5' -62.8 NC_001650.1 + 89178 0.69 0.489555
Target:  5'- uGCCCGGG-GCUCCGg-GGCGACg--- -3'
miRNA:   3'- -CGGGCCCuCGAGGUggCCGCUGaccu -5'
3657 5' -62.8 NC_001650.1 + 27467 0.69 0.498555
Target:  5'- gGCCCGGGuccagaagcaGGcCUCCAaccggggCGGCGGCggGGAg -3'
miRNA:   3'- -CGGGCCC----------UC-GAGGUg------GCCGCUGa-CCU- -5'
3657 5' -62.8 NC_001650.1 + 110960 0.69 0.507628
Target:  5'- uCUCGGGGGCUUCGggGGCGgcuGCUGGGg -3'
miRNA:   3'- cGGGCCCUCGAGGUggCCGC---UGACCU- -5'
3657 5' -62.8 NC_001650.1 + 79086 0.69 0.511277
Target:  5'- cCCCGGGccuGGCUCCgggcgcggccgcucgGCgGGCGGgaGGAg -3'
miRNA:   3'- cGGGCCC---UCGAGG---------------UGgCCGCUgaCCU- -5'
3657 5' -62.8 NC_001650.1 + 22275 0.68 0.525054
Target:  5'- --gCGGGAuCUCCACCGGgGccucggaGCUGGAc -3'
miRNA:   3'- cggGCCCUcGAGGUGGCCgC-------UGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.