miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3657 5' -62.8 NC_001650.1 + 9130 0.66 0.678118
Target:  5'- gGCCCcauGGGA-CUCC-CCcGUGGCUGGGc -3'
miRNA:   3'- -CGGG---CCCUcGAGGuGGcCGCUGACCU- -5'
3657 5' -62.8 NC_001650.1 + 15136 0.67 0.636942
Target:  5'- cGCCCGGGGGCUCUG-CGGUuACaucagcacccccguUGGGc -3'
miRNA:   3'- -CGGGCCCUCGAGGUgGCCGcUG--------------ACCU- -5'
3657 5' -62.8 NC_001650.1 + 22275 0.68 0.525054
Target:  5'- --gCGGGAuCUCCACCGGgGccucggaGCUGGAc -3'
miRNA:   3'- cggGCCCUcGAGGUGGCCgC-------UGACCU- -5'
3657 5' -62.8 NC_001650.1 + 22631 0.7 0.419747
Target:  5'- cGCCCccagcgcgcgGGGGGCgcguacgCCucgcacgacagcgGCCGGCGGCUGGc -3'
miRNA:   3'- -CGGG----------CCCUCGa------GG-------------UGGCCGCUGACCu -5'
3657 5' -62.8 NC_001650.1 + 23232 0.71 0.396255
Target:  5'- cGCCCGGGAGgUCCuGCUGGgGAucCUGaGGc -3'
miRNA:   3'- -CGGGCCCUCgAGG-UGGCCgCU--GAC-CU- -5'
3657 5' -62.8 NC_001650.1 + 25324 0.66 0.687626
Target:  5'- uCCCGGGAGCagaUC-CCGGCcACggGGAg -3'
miRNA:   3'- cGGGCCCUCGa--GGuGGCCGcUGa-CCU- -5'
3657 5' -62.8 NC_001650.1 + 27467 0.69 0.498555
Target:  5'- gGCCCGGGuccagaagcaGGcCUCCAaccggggCGGCGGCggGGAg -3'
miRNA:   3'- -CGGGCCC----------UC-GAGGUg------GCCGCUGa-CCU- -5'
3657 5' -62.8 NC_001650.1 + 27927 0.7 0.419747
Target:  5'- aGCCCGaguuguuGGAGCUCUuCUGGUG-CUGGGc -3'
miRNA:   3'- -CGGGC-------CCUCGAGGuGGCCGCuGACCU- -5'
3657 5' -62.8 NC_001650.1 + 35695 0.67 0.611021
Target:  5'- gGCCgGGGGGCUCa--CGGCcGCgGGGu -3'
miRNA:   3'- -CGGgCCCUCGAGgugGCCGcUGaCCU- -5'
3657 5' -62.8 NC_001650.1 + 50276 0.76 0.187549
Target:  5'- cGCCCGGGAGCg--GgCGGCGGCgggGGAg -3'
miRNA:   3'- -CGGGCCCUCGaggUgGCCGCUGa--CCU- -5'
3657 5' -62.8 NC_001650.1 + 52304 0.66 0.659009
Target:  5'- aUuuGGGaAGaggCCACCGGCGgcccuguauACUGGAc -3'
miRNA:   3'- cGggCCC-UCga-GGUGGCCGC---------UGACCU- -5'
3657 5' -62.8 NC_001650.1 + 52598 0.73 0.295391
Target:  5'- cGCCCGGGAGCUcugggaugggggCCACUGGCccggGGGu -3'
miRNA:   3'- -CGGGCCCUCGA------------GGUGGCCGcugaCCU- -5'
3657 5' -62.8 NC_001650.1 + 54394 1.09 0.000958
Target:  5'- gGCCCGGGAGCUCCACCGGCGACUGGAc -3'
miRNA:   3'- -CGGGCCCUCGAGGUGGCCGCUGACCU- -5'
3657 5' -62.8 NC_001650.1 + 58951 0.67 0.614858
Target:  5'- gGCCCGGGAGg--CGgCGGCGGCUucuggcacgggcccgGGAg -3'
miRNA:   3'- -CGGGCCCUCgagGUgGCCGCUGA---------------CCU- -5'
3657 5' -62.8 NC_001650.1 + 60340 0.68 0.541767
Target:  5'- gGCCCuGGAGaccgcggacgcggcCUCCGCgGGCGGCgGGu -3'
miRNA:   3'- -CGGGcCCUC--------------GAGGUGgCCGCUGaCCu -5'
3657 5' -62.8 NC_001650.1 + 60964 0.67 0.60144
Target:  5'- uGCCCagcaccuacgGGGAGCUCC--UGGCcGACcUGGAc -3'
miRNA:   3'- -CGGG----------CCCUCGAGGugGCCG-CUG-ACCU- -5'
3657 5' -62.8 NC_001650.1 + 62874 0.66 0.659009
Target:  5'- aGCCaGGGGGCUCCGgagcacCCGGgGGCg--- -3'
miRNA:   3'- -CGGgCCCUCGAGGU------GGCCgCUGaccu -5'
3657 5' -62.8 NC_001650.1 + 66425 0.74 0.252958
Target:  5'- gGCCCGuGGAGCccgccgCCACCGGC--UUGGAg -3'
miRNA:   3'- -CGGGC-CCUCGa-----GGUGGCCGcuGACCU- -5'
3657 5' -62.8 NC_001650.1 + 66876 0.67 0.60144
Target:  5'- gGCgCCGGGGGCgggggCgaGCCGGgGGCcggGGAg -3'
miRNA:   3'- -CG-GGCCCUCGa----Gg-UGGCCgCUGa--CCU- -5'
3657 5' -62.8 NC_001650.1 + 71612 0.68 0.57284
Target:  5'- cGCUCGGGGGcCUCgGgaaaGGCGGcCUGGAg -3'
miRNA:   3'- -CGGGCCCUC-GAGgUgg--CCGCU-GACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.