Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3657 | 5' | -62.8 | NC_001650.1 | + | 110874 | 0.67 | 0.591879 |
Target: 5'- aGCUaCGGGccccuaucGCcgCCGCCgcGGCGACUGGAu -3' miRNA: 3'- -CGG-GCCCu-------CGa-GGUGG--CCGCUGACCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 22275 | 0.68 | 0.525054 |
Target: 5'- --gCGGGAuCUCCACCGGgGccucggaGCUGGAc -3' miRNA: 3'- cggGCCCUcGAGGUGGCCgC-------UGACCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 91152 | 0.68 | 0.525977 |
Target: 5'- gGCCgCGGGGGCUgCugCGGauGCUGcGGa -3' miRNA: 3'- -CGG-GCCCUCGAgGugGCCgcUGAC-CU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 119944 | 0.68 | 0.553948 |
Target: 5'- uGCCCcGGGGCUCCugCgGGUGGaaGGu -3' miRNA: 3'- -CGGGcCCUCGAGGugG-CCGCUgaCCu -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 131547 | 0.68 | 0.553948 |
Target: 5'- cGCCCGGGGGCUggACgCGG-GGC-GGAg -3' miRNA: 3'- -CGGGCCCUCGAggUG-GCCgCUGaCCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 82131 | 0.68 | 0.560541 |
Target: 5'- gGCCuCGGGAGCggauuuucauaacaUCCGCauGCccaGGCUGGAg -3' miRNA: 3'- -CGG-GCCCUCG--------------AGGUGgcCG---CUGACCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 88617 | 0.67 | 0.582343 |
Target: 5'- gGCCaGGGGGgUCUACuccugccccggCGGCGACgggGGAg -3' miRNA: 3'- -CGGgCCCUCgAGGUG-----------GCCGCUGa--CCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 132837 | 0.67 | 0.582343 |
Target: 5'- --gCGGGAggagccGCggCCGCCgcGGCGACUGGGg -3' miRNA: 3'- cggGCCCU------CGa-GGUGG--CCGCUGACCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 145497 | 0.67 | 0.582343 |
Target: 5'- gGgCCGGGGGCUCC--UGGUcaGCUGGAg -3' miRNA: 3'- -CgGGCCCUCGAGGugGCCGc-UGACCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 79086 | 0.69 | 0.511277 |
Target: 5'- cCCCGGGccuGGCUCCgggcgcggccgcucgGCgGGCGGgaGGAg -3' miRNA: 3'- cGGGCCC---UCGAGG---------------UGgCCGCUgaCCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 27467 | 0.69 | 0.498555 |
Target: 5'- gGCCCGGGuccagaagcaGGcCUCCAaccggggCGGCGGCggGGAg -3' miRNA: 3'- -CGGGCCC----------UC-GAGGUg------GCCGCUGa-CCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 89178 | 0.69 | 0.489555 |
Target: 5'- uGCCCGGG-GCUCCGg-GGCGACg--- -3' miRNA: 3'- -CGGGCCCuCGAGGUggCCGCUGaccu -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 50276 | 0.76 | 0.187549 |
Target: 5'- cGCCCGGGAGCg--GgCGGCGGCgggGGAg -3' miRNA: 3'- -CGGGCCCUCGaggUgGCCGCUGa--CCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 66425 | 0.74 | 0.252958 |
Target: 5'- gGCCCGuGGAGCccgccgCCACCGGC--UUGGAg -3' miRNA: 3'- -CGGGC-CCUCGa-----GGUGGCCGcuGACCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 52598 | 0.73 | 0.295391 |
Target: 5'- cGCCCGGGAGCUcugggaugggggCCACUGGCccggGGGu -3' miRNA: 3'- -CGGGCCCUCGA------------GGUGGCCGcugaCCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 129612 | 0.71 | 0.380554 |
Target: 5'- cGUUCGGGGGCaUCACgGGCGAggaCUGGGc -3' miRNA: 3'- -CGGGCCCUCGaGGUGgCCGCU---GACCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 23232 | 0.71 | 0.396255 |
Target: 5'- cGCCCGGGAGgUCCuGCUGGgGAucCUGaGGc -3' miRNA: 3'- -CGGGCCCUCgAGG-UGGCCgCU--GAC-CU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 156459 | 0.7 | 0.419747 |
Target: 5'- aGCCUGGGGGCagaagugUCCacccuggccuuGCCGGCGAa-GGAg -3' miRNA: 3'- -CGGGCCCUCG-------AGG-----------UGGCCGCUgaCCU- -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 22631 | 0.7 | 0.419747 |
Target: 5'- cGCCCccagcgcgcgGGGGGCgcguacgCCucgcacgacagcgGCCGGCGGCUGGc -3' miRNA: 3'- -CGGG----------CCCUCGa------GG-------------UGGCCGCUGACCu -5' |
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3657 | 5' | -62.8 | NC_001650.1 | + | 111076 | 0.69 | 0.480633 |
Target: 5'- cCCCaGGGGCUCCAgCGGCGcCaGGc -3' miRNA: 3'- cGGGcCCUCGAGGUgGCCGCuGaCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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