Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3660 | 5' | -56.9 | NC_001650.1 | + | 57427 | 1.1 | 0.001923 |
Target: 5'- gCCACAGCAGCAACAGCAGCCGCAGCAg -3' miRNA: 3'- -GGUGUCGUCGUUGUCGUCGGCGUCGU- -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 110723 | 0.87 | 0.070593 |
Target: 5'- gCCGCAGCAGCAACagccucAGCAGCCcCAGCAg -3' miRNA: 3'- -GGUGUCGUCGUUG------UCGUCGGcGUCGU- -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 102531 | 0.85 | 0.102374 |
Target: 5'- gCCGCAGCcccagcccuaccAGCAACAGCaguuucuccAGCCGCAGCAg -3' miRNA: 3'- -GGUGUCG------------UCGUUGUCG---------UCGGCGUCGU- -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 101803 | 0.82 | 0.147286 |
Target: 5'- gCCucuCAGCAGCcGCAGCaggcgcuaaGGCCGCAGCAg -3' miRNA: 3'- -GGu--GUCGUCGuUGUCG---------UCGGCGUCGU- -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 110605 | 0.81 | 0.171571 |
Target: 5'- gCCcCAGCAGCAACAGCAGCaGCGGa- -3' miRNA: 3'- -GGuGUCGUCGUUGUCGUCGgCGUCgu -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 142704 | 0.81 | 0.18043 |
Target: 5'- -aGCGGCgAGCGGCGGCGGCgGCGGCGc -3' miRNA: 3'- ggUGUCG-UCGUUGUCGUCGgCGUCGU- -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 28009 | 0.8 | 0.199369 |
Target: 5'- aCGCAGCuGGCcgGGCAGgAGCCGCGGCAc -3' miRNA: 3'- gGUGUCG-UCG--UUGUCgUCGGCGUCGU- -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 91365 | 0.79 | 0.231009 |
Target: 5'- uCCGCAGCAuccGCAGCAGCccCCGCGGCc -3' miRNA: 3'- -GGUGUCGU---CGUUGUCGucGGCGUCGu -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 102256 | 0.79 | 0.231009 |
Target: 5'- gCGCAGcCGGC-GCAGguGCUGCAGCAg -3' miRNA: 3'- gGUGUC-GUCGuUGUCguCGGCGUCGU- -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 142877 | 0.79 | 0.244807 |
Target: 5'- gCGCGGCGGCggagaGggaggaggagaggccGCAGCAGCCGCAGCc -3' miRNA: 3'- gGUGUCGUCG-----U---------------UGUCGUCGGCGUCGu -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 96021 | 0.78 | 0.266779 |
Target: 5'- -aGCAGCAGCGACAGCgagAGCgauggcgauCGCAGCAc -3' miRNA: 3'- ggUGUCGUCGUUGUCG---UCG---------GCGUCGU- -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 133055 | 0.78 | 0.273158 |
Target: 5'- cCCcCAGUcGCcGCGGCGGCCGCGGCu -3' miRNA: 3'- -GGuGUCGuCGuUGUCGUCGGCGUCGu -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 95626 | 0.78 | 0.27966 |
Target: 5'- -aGCGGCGGCGGCAGCGGCgCGCAa-- -3' miRNA: 3'- ggUGUCGUCGUUGUCGUCG-GCGUcgu -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 111280 | 0.77 | 0.293031 |
Target: 5'- cCCGCAGCAGUgcccgccccAACAGUgcccGCCGCAGCc -3' miRNA: 3'- -GGUGUCGUCG---------UUGUCGu---CGGCGUCGu -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 134944 | 0.77 | 0.293031 |
Target: 5'- uCCACAGCAGCAucugggggguccGCcucuGCAGCCGCcucuggGGCAu -3' miRNA: 3'- -GGUGUCGUCGU------------UGu---CGUCGGCG------UCGU- -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 122299 | 0.77 | 0.299902 |
Target: 5'- cCCGCGGCGcGCgAGCAGCuggccGCCGCGGCc -3' miRNA: 3'- -GGUGUCGU-CG-UUGUCGu----CGGCGUCGu -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 60489 | 0.77 | 0.306897 |
Target: 5'- gCCGCc-CAGCGGCcuCAGCCGCAGCAg -3' miRNA: 3'- -GGUGucGUCGUUGucGUCGGCGUCGU- -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 85970 | 0.76 | 0.328626 |
Target: 5'- cCCGCucgaguGUAGCAuCGGgGGCCGCGGCAc -3' miRNA: 3'- -GGUGu-----CGUCGUuGUCgUCGGCGUCGU- -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 76981 | 0.76 | 0.367317 |
Target: 5'- gCCAUAGagGGCAACAGCAGCCaggacucuGCGGUg -3' miRNA: 3'- -GGUGUCg-UCGUUGUCGUCGG--------CGUCGu -5' |
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3660 | 5' | -56.9 | NC_001650.1 | + | 111085 | 0.76 | 0.367317 |
Target: 5'- gCgGCGGCGGCGAUAGgGGCCcGUAGCu -3' miRNA: 3'- -GgUGUCGUCGUUGUCgUCGG-CGUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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