miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3660 5' -56.9 NC_001650.1 + 8981 0.68 0.788556
Target:  5'- cCCACAacaagguaguGCAGCAucggGCAGCAGCgGgCAcuGCAc -3'
miRNA:   3'- -GGUGU----------CGUCGU----UGUCGUCGgC-GU--CGU- -5'
3660 5' -56.9 NC_001650.1 + 11251 0.69 0.711835
Target:  5'- gCCGCuGCGGCGACGGCgAGUCaucucuGUAGUAg -3'
miRNA:   3'- -GGUGuCGUCGUUGUCG-UCGG------CGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 11448 0.74 0.435428
Target:  5'- gUCGCcGCAGCGGCAGcCGGgCGUGGCAg -3'
miRNA:   3'- -GGUGuCGUCGUUGUC-GUCgGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 20207 0.66 0.871424
Target:  5'- gCCAC-GCGGUGGCGGUAGUgUGCGGUu -3'
miRNA:   3'- -GGUGuCGUCGUUGUCGUCG-GCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 21743 0.66 0.88564
Target:  5'- uCCACcGCAGCcGCGGCccucCCaGCAGUAg -3'
miRNA:   3'- -GGUGuCGUCGuUGUCGuc--GG-CGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 21743 0.69 0.720768
Target:  5'- aCACuugaucaGGgGGCAGCAaCAGCUGCGGCGc -3'
miRNA:   3'- gGUG-------UCgUCGUUGUcGUCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 22656 0.7 0.671558
Target:  5'- aCGCcucGCA-CGACAGCGGCCgGCGGCu -3'
miRNA:   3'- gGUGu--CGUcGUUGUCGUCGG-CGUCGu -5'
3660 5' -56.9 NC_001650.1 + 22772 0.69 0.741364
Target:  5'- aCCAU-GCAcGCcaaGAUAGCGGCCGCGuGCGg -3'
miRNA:   3'- -GGUGuCGU-CG---UUGUCGUCGGCGU-CGU- -5'
3660 5' -56.9 NC_001650.1 + 24739 0.69 0.701844
Target:  5'- gCGCGGCcagggGGUAGgGGCAGCCG-GGCAg -3'
miRNA:   3'- gGUGUCG-----UCGUUgUCGUCGGCgUCGU- -5'
3660 5' -56.9 NC_001650.1 + 25156 0.68 0.779363
Target:  5'- cCCugGGCccAGCAggGCAGCAGggacccCCGCAGgGu -3'
miRNA:   3'- -GGugUCG--UCGU--UGUCGUC------GGCGUCgU- -5'
3660 5' -56.9 NC_001650.1 + 27891 0.72 0.56975
Target:  5'- aCUGCAgGUAGUAGCAGUGGCgCGcCAGCAu -3'
miRNA:   3'- -GGUGU-CGUCGUUGUCGUCG-GC-GUCGU- -5'
3660 5' -56.9 NC_001650.1 + 28009 0.8 0.199369
Target:  5'- aCGCAGCuGGCcgGGCAGgAGCCGCGGCAc -3'
miRNA:   3'- gGUGUCG-UCG--UUGUCgUCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 29724 0.67 0.818713
Target:  5'- cCCACAGCAGgAcgaguucgcgcuagcGCcccaGGCGGCCGC-GCc -3'
miRNA:   3'- -GGUGUCGUCgU---------------UG----UCGUCGGCGuCGu -5'
3660 5' -56.9 NC_001650.1 + 30918 0.68 0.806514
Target:  5'- gCCGCGGaCAGgGGCGG-GGUCGUGGCAc -3'
miRNA:   3'- -GGUGUC-GUCgUUGUCgUCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 34532 0.69 0.751029
Target:  5'- aCCAauuuCAGCAGCGGCAGCGGgCGgaagaggaGGCc -3'
miRNA:   3'- -GGU----GUCGUCGUUGUCGUCgGCg-------UCGu -5'
3660 5' -56.9 NC_001650.1 + 37177 0.71 0.610343
Target:  5'- gCCACAcguuCAGCAGC-GUGGCCaGCAGCGa -3'
miRNA:   3'- -GGUGUc---GUCGUUGuCGUCGG-CGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 37579 0.67 0.840475
Target:  5'- aCGaGGCGGUgcgGGCGGCGGCCG-AGCGc -3'
miRNA:   3'- gGUgUCGUCG---UUGUCGUCGGCgUCGU- -5'
3660 5' -56.9 NC_001650.1 + 38625 0.69 0.705848
Target:  5'- gCCACAGCGGCGACAGUuuaAGCacugaauguaucaaGgGGCc -3'
miRNA:   3'- -GGUGUCGUCGUUGUCG---UCGg-------------CgUCGu -5'
3660 5' -56.9 NC_001650.1 + 40995 0.75 0.40045
Target:  5'- aCACAGCuGCAuggugucuuggACGGCGGUCGguGCGc -3'
miRNA:   3'- gGUGUCGuCGU-----------UGUCGUCGGCguCGU- -5'
3660 5' -56.9 NC_001650.1 + 42589 0.68 0.79761
Target:  5'- gCCACGGgGG-GGCuGCAGCUGCAGa- -3'
miRNA:   3'- -GGUGUCgUCgUUGuCGUCGGCGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.