miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3660 5' -56.9 NC_001650.1 + 57427 1.1 0.001923
Target:  5'- gCCACAGCAGCAACAGCAGCCGCAGCAg -3'
miRNA:   3'- -GGUGUCGUCGUUGUCGUCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 110723 0.87 0.070593
Target:  5'- gCCGCAGCAGCAACagccucAGCAGCCcCAGCAg -3'
miRNA:   3'- -GGUGUCGUCGUUG------UCGUCGGcGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 102531 0.85 0.102374
Target:  5'- gCCGCAGCcccagcccuaccAGCAACAGCaguuucuccAGCCGCAGCAg -3'
miRNA:   3'- -GGUGUCG------------UCGUUGUCG---------UCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 101803 0.82 0.147286
Target:  5'- gCCucuCAGCAGCcGCAGCaggcgcuaaGGCCGCAGCAg -3'
miRNA:   3'- -GGu--GUCGUCGuUGUCG---------UCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 110605 0.81 0.171571
Target:  5'- gCCcCAGCAGCAACAGCAGCaGCGGa- -3'
miRNA:   3'- -GGuGUCGUCGUUGUCGUCGgCGUCgu -5'
3660 5' -56.9 NC_001650.1 + 142704 0.81 0.18043
Target:  5'- -aGCGGCgAGCGGCGGCGGCgGCGGCGc -3'
miRNA:   3'- ggUGUCG-UCGUUGUCGUCGgCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 28009 0.8 0.199369
Target:  5'- aCGCAGCuGGCcgGGCAGgAGCCGCGGCAc -3'
miRNA:   3'- gGUGUCG-UCG--UUGUCgUCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 91365 0.79 0.231009
Target:  5'- uCCGCAGCAuccGCAGCAGCccCCGCGGCc -3'
miRNA:   3'- -GGUGUCGU---CGUUGUCGucGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 102256 0.79 0.231009
Target:  5'- gCGCAGcCGGC-GCAGguGCUGCAGCAg -3'
miRNA:   3'- gGUGUC-GUCGuUGUCguCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 142877 0.79 0.244807
Target:  5'- gCGCGGCGGCggagaGggaggaggagaggccGCAGCAGCCGCAGCc -3'
miRNA:   3'- gGUGUCGUCG-----U---------------UGUCGUCGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 96021 0.78 0.266779
Target:  5'- -aGCAGCAGCGACAGCgagAGCgauggcgauCGCAGCAc -3'
miRNA:   3'- ggUGUCGUCGUUGUCG---UCG---------GCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 133055 0.78 0.273158
Target:  5'- cCCcCAGUcGCcGCGGCGGCCGCGGCu -3'
miRNA:   3'- -GGuGUCGuCGuUGUCGUCGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 95626 0.78 0.27966
Target:  5'- -aGCGGCGGCGGCAGCGGCgCGCAa-- -3'
miRNA:   3'- ggUGUCGUCGUUGUCGUCG-GCGUcgu -5'
3660 5' -56.9 NC_001650.1 + 111280 0.77 0.293031
Target:  5'- cCCGCAGCAGUgcccgccccAACAGUgcccGCCGCAGCc -3'
miRNA:   3'- -GGUGUCGUCG---------UUGUCGu---CGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 134944 0.77 0.293031
Target:  5'- uCCACAGCAGCAucugggggguccGCcucuGCAGCCGCcucuggGGCAu -3'
miRNA:   3'- -GGUGUCGUCGU------------UGu---CGUCGGCG------UCGU- -5'
3660 5' -56.9 NC_001650.1 + 122299 0.77 0.299902
Target:  5'- cCCGCGGCGcGCgAGCAGCuggccGCCGCGGCc -3'
miRNA:   3'- -GGUGUCGU-CG-UUGUCGu----CGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 60489 0.77 0.306897
Target:  5'- gCCGCc-CAGCGGCcuCAGCCGCAGCAg -3'
miRNA:   3'- -GGUGucGUCGUUGucGUCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 85970 0.76 0.328626
Target:  5'- cCCGCucgaguGUAGCAuCGGgGGCCGCGGCAc -3'
miRNA:   3'- -GGUGu-----CGUCGUuGUCgUCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 76981 0.76 0.367317
Target:  5'- gCCAUAGagGGCAACAGCAGCCaggacucuGCGGUg -3'
miRNA:   3'- -GGUGUCg-UCGUUGUCGUCGG--------CGUCGu -5'
3660 5' -56.9 NC_001650.1 + 111085 0.76 0.367317
Target:  5'- gCgGCGGCGGCGAUAGgGGCCcGUAGCu -3'
miRNA:   3'- -GgUGUCGUCGUUGUCgUCGG-CGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.