miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3660 5' -56.9 NC_001650.1 + 52782 0.71 0.589986
Target:  5'- cUCGCGGCGGCGGCGGCccucggggcccGGgCGCAGg- -3'
miRNA:   3'- -GGUGUCGUCGUUGUCG-----------UCgGCGUCgu -5'
3660 5' -56.9 NC_001650.1 + 110560 0.75 0.40045
Target:  5'- gCCGCccccGCAaCAACAGCAGCCuCAGCAa -3'
miRNA:   3'- -GGUGu---CGUcGUUGUCGUCGGcGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 102743 0.75 0.409026
Target:  5'- -gGCGGCAGCAGgAGCAGCaacauCAGCAg -3'
miRNA:   3'- ggUGUCGUCGUUgUCGUCGgc---GUCGU- -5'
3660 5' -56.9 NC_001650.1 + 110526 0.74 0.444445
Target:  5'- -aGCAGCAGCcucAGCAGCGGgCGCgcgAGCAa -3'
miRNA:   3'- ggUGUCGUCG---UUGUCGUCgGCG---UCGU- -5'
3660 5' -56.9 NC_001650.1 + 45096 0.74 0.453566
Target:  5'- cCCugAGCGggcuGCGGCuuGCGGCCGCGGUu -3'
miRNA:   3'- -GGugUCGU----CGUUGu-CGUCGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 164808 0.73 0.472107
Target:  5'- gCCGcCGGCGGCcGCgAGCAGacccCCGCGGCAa -3'
miRNA:   3'- -GGU-GUCGUCGuUG-UCGUC----GGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 52679 0.73 0.510284
Target:  5'- gCCcCAGCAGgGACuugGGCcucucgGGCCGCAGCGg -3'
miRNA:   3'- -GGuGUCGUCgUUG---UCG------UCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 125106 0.72 0.549689
Target:  5'- gCACAGCAgGCGGuCAGCGGCCcgaaCAGCc -3'
miRNA:   3'- gGUGUCGU-CGUU-GUCGUCGGc---GUCGu -5'
3660 5' -56.9 NC_001650.1 + 133561 0.72 0.549689
Target:  5'- cCCGCgAGCGGCGAaacgAGCCGCAGCc -3'
miRNA:   3'- -GGUG-UCGUCGUUgucgUCGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 40995 0.75 0.40045
Target:  5'- aCACAGCuGCAuggugucuuggACGGCGGUCGguGCGc -3'
miRNA:   3'- gGUGUCGuCGU-----------UGUCGUCGGCguCGU- -5'
3660 5' -56.9 NC_001650.1 + 150979 0.75 0.391989
Target:  5'- -gGCGGUGGCGGCGGUGGUgGCGGCGg -3'
miRNA:   3'- ggUGUCGUCGUUGUCGUCGgCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 85970 0.76 0.328626
Target:  5'- cCCGCucgaguGUAGCAuCGGgGGCCGCGGCAc -3'
miRNA:   3'- -GGUGu-----CGUCGUuGUCgUCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 102531 0.85 0.102374
Target:  5'- gCCGCAGCcccagcccuaccAGCAACAGCaguuucuccAGCCGCAGCAg -3'
miRNA:   3'- -GGUGUCG------------UCGUUGUCG---------UCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 101803 0.82 0.147286
Target:  5'- gCCucuCAGCAGCcGCAGCaggcgcuaaGGCCGCAGCAg -3'
miRNA:   3'- -GGu--GUCGUCGuUGUCG---------UCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 110605 0.81 0.171571
Target:  5'- gCCcCAGCAGCAACAGCAGCaGCGGa- -3'
miRNA:   3'- -GGuGUCGUCGUUGUCGUCGgCGUCgu -5'
3660 5' -56.9 NC_001650.1 + 142704 0.81 0.18043
Target:  5'- -aGCGGCgAGCGGCGGCGGCgGCGGCGc -3'
miRNA:   3'- ggUGUCG-UCGUUGUCGUCGgCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 102256 0.79 0.231009
Target:  5'- gCGCAGcCGGC-GCAGguGCUGCAGCAg -3'
miRNA:   3'- gGUGUC-GUCGuUGUCguCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 95626 0.78 0.27966
Target:  5'- -aGCGGCGGCGGCAGCGGCgCGCAa-- -3'
miRNA:   3'- ggUGUCGUCGUUGUCGUCG-GCGUcgu -5'
3660 5' -56.9 NC_001650.1 + 111280 0.77 0.293031
Target:  5'- cCCGCAGCAGUgcccgccccAACAGUgcccGCCGCAGCc -3'
miRNA:   3'- -GGUGUCGUCG---------UUGUCGu---CGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 122299 0.77 0.299902
Target:  5'- cCCGCGGCGcGCgAGCAGCuggccGCCGCGGCc -3'
miRNA:   3'- -GGUGUCGU-CG-UUGUCGu----CGGCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.