Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3663 | 3' | -66.1 | NC_001650.1 | + | 29752 | 0.68 | 0.378413 |
Target: 5'- cCCCaGGCgg-CCGCGCCCCAGUa-- -3' miRNA: 3'- aGGGcCCGgagGGCGCGGGGUCAgau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 60048 | 0.68 | 0.393133 |
Target: 5'- aUCCUGGGCUgccugCCCGUgaccaugGCCgUGGUCUAa -3' miRNA: 3'- -AGGGCCCGGa----GGGCG-------CGGgGUCAGAU- -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 145973 | 0.68 | 0.401823 |
Target: 5'- gUCCCGGGaCCcgUUgGCGUCCCAGaUCUu -3' miRNA: 3'- -AGGGCCC-GGa-GGgCGCGGGGUC-AGAu -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 127267 | 0.68 | 0.401823 |
Target: 5'- cCCCGGGC--CCgGCGCCCCcucGUCc- -3' miRNA: 3'- aGGGCCCGgaGGgCGCGGGGu--CAGau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 61244 | 0.68 | 0.401823 |
Target: 5'- aUCUCGGGCCUCUacacgagGCaGUCCCAGUg-- -3' miRNA: 3'- -AGGGCCCGGAGGg------CG-CGGGGUCAgau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 130213 | 0.67 | 0.409829 |
Target: 5'- gCCCGcGGCCucgUCCCGCGCCgCCc-UCa- -3' miRNA: 3'- aGGGC-CCGG---AGGGCGCGG-GGucAGau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 126960 | 0.67 | 0.417932 |
Target: 5'- cCCCGGGCCccUCgCCGCucGUCCCcGUCc- -3' miRNA: 3'- aGGGCCCGG--AG-GGCG--CGGGGuCAGau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 21938 | 0.67 | 0.417932 |
Target: 5'- cUCCCcGGCCUCCUucuGCGgacCCCCGG-CUAc -3' miRNA: 3'- -AGGGcCCGGAGGG---CGC---GGGGUCaGAU- -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 22583 | 0.67 | 0.417932 |
Target: 5'- gUCCGGGgCggCgGCGCCUCGGUCUu -3' miRNA: 3'- aGGGCCCgGagGgCGCGGGGUCAGAu -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 47221 | 0.67 | 0.426133 |
Target: 5'- aUUUgGGGUCUCgCGCGCgCaCCAGUCUc -3' miRNA: 3'- -AGGgCCCGGAGgGCGCG-G-GGUCAGAu -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 111148 | 0.67 | 0.43193 |
Target: 5'- cCCCGGGcCCUCUCagggagggugugagGCggGUCCCAGUCa- -3' miRNA: 3'- aGGGCCC-GGAGGG--------------CG--CGGGGUCAGau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 148010 | 0.67 | 0.441974 |
Target: 5'- gCCCGGGCgucgcggcaggcuCUCCaggaGCGuguuCCCCGGUCg- -3' miRNA: 3'- aGGGCCCG-------------GAGGg---CGC----GGGGUCAGau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 50819 | 0.67 | 0.442817 |
Target: 5'- uUCUCGGGCa--CCGCgGCCCCGG-Cg- -3' miRNA: 3'- -AGGGCCCGgagGGCG-CGGGGUCaGau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 132555 | 0.67 | 0.442817 |
Target: 5'- cCCCGGGCgaCgCGC-CCCCGGUg-- -3' miRNA: 3'- aGGGCCCGgaGgGCGcGGGGUCAgau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 110904 | 0.67 | 0.451296 |
Target: 5'- -gCCuGGCCUgCCCGCuggGUCCCGGUCc- -3' miRNA: 3'- agGGcCCGGA-GGGCG---CGGGGUCAGau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 107060 | 0.67 | 0.451296 |
Target: 5'- cCCCGGGCCcgacCCCaGCGCCCacccCUGc -3' miRNA: 3'- aGGGCCCGGa---GGG-CGCGGGgucaGAU- -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 51757 | 0.67 | 0.459863 |
Target: 5'- cUCUCGGGUCUUCacaGCCUCAGUCc- -3' miRNA: 3'- -AGGGCCCGGAGGgcgCGGGGUCAGau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 134363 | 0.67 | 0.459863 |
Target: 5'- ---aGGGCCgCCCGCggucGCCCCcuuGGUCUGg -3' miRNA: 3'- agggCCCGGaGGGCG----CGGGG---UCAGAU- -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 59940 | 0.67 | 0.459863 |
Target: 5'- gCCaCGGGCCcCUCGaCGCCCCuGUa-- -3' miRNA: 3'- aGG-GCCCGGaGGGC-GCGGGGuCAgau -5' |
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3663 | 3' | -66.1 | NC_001650.1 | + | 27594 | 0.66 | 0.468516 |
Target: 5'- uUCCCGGGCgUgCC-CGCCUCGGcccUCUc -3' miRNA: 3'- -AGGGCCCGgAgGGcGCGGGGUC---AGAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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