miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3663 3' -66.1 NC_001650.1 + 59144 1.06 0.000755
Target:  5'- cUCCCGGGCCUCCCGCGCCCCAGUCUAu -3'
miRNA:   3'- -AGGGCCCGGAGGGCGCGGGGUCAGAU- -5'
3663 3' -66.1 NC_001650.1 + 145933 0.77 0.103048
Target:  5'- cCCCGGGCUcCCUGUGCCCCAGcCc- -3'
miRNA:   3'- aGGGCCCGGaGGGCGCGGGGUCaGau -5'
3663 3' -66.1 NC_001650.1 + 58105 0.75 0.131404
Target:  5'- aCCCGGGCUacuaUCCCGCGCCCUAc---- -3'
miRNA:   3'- aGGGCCCGG----AGGGCGCGGGGUcagau -5'
3663 3' -66.1 NC_001650.1 + 164913 0.74 0.166809
Target:  5'- cCCCGGGCCcCaCCGCggccGCCgCCAGUCUc -3'
miRNA:   3'- aGGGCCCGGaG-GGCG----CGG-GGUCAGAu -5'
3663 3' -66.1 NC_001650.1 + 68750 0.73 0.170786
Target:  5'- gCCCGGGUCUCCCGgggggcguacuUGCCCCuGUUg- -3'
miRNA:   3'- aGGGCCCGGAGGGC-----------GCGGGGuCAGau -5'
3663 3' -66.1 NC_001650.1 + 46575 0.73 0.187553
Target:  5'- cCCCGcGGCCgaugcggCgCCGCGCCCCGGcUCg- -3'
miRNA:   3'- aGGGC-CCGGa------G-GGCGCGGGGUC-AGau -5'
3663 3' -66.1 NC_001650.1 + 109360 0.71 0.246746
Target:  5'- gCCCGGGCCUCCCggacgcggacGgGCCCCuGg--- -3'
miRNA:   3'- aGGGCCCGGAGGG----------CgCGGGGuCagau -5'
3663 3' -66.1 NC_001650.1 + 67069 0.7 0.26967
Target:  5'- cCCCGGcGCCUCCCGCgGCgCCCGc---- -3'
miRNA:   3'- aGGGCC-CGGAGGGCG-CG-GGGUcagau -5'
3663 3' -66.1 NC_001650.1 + 51228 0.7 0.26967
Target:  5'- aCCUugaucugagaggGGGCCgccgcgCCCGCGCCCCcGUCc- -3'
miRNA:   3'- aGGG------------CCCGGa-----GGGCGCGGGGuCAGau -5'
3663 3' -66.1 NC_001650.1 + 61144 0.7 0.26967
Target:  5'- cCCCGGGUCcCCCGcCGCCCCcauGaCUAu -3'
miRNA:   3'- aGGGCCCGGaGGGC-GCGGGGu--CaGAU- -5'
3663 3' -66.1 NC_001650.1 + 22532 0.7 0.275664
Target:  5'- aCCgGGGCCaCCCGCGCCuCCA-UCa- -3'
miRNA:   3'- aGGgCCCGGaGGGCGCGG-GGUcAGau -5'
3663 3' -66.1 NC_001650.1 + 88953 0.7 0.29428
Target:  5'- uUCgaGGGCCUCCCGCcgGCCCUccUCUAc -3'
miRNA:   3'- -AGggCCCGGAGGGCG--CGGGGucAGAU- -5'
3663 3' -66.1 NC_001650.1 + 35844 0.7 0.3007
Target:  5'- aCCCGGuacaCCUCCCGCGCCUCGa---- -3'
miRNA:   3'- aGGGCCc---GGAGGGCGCGGGGUcagau -5'
3663 3' -66.1 NC_001650.1 + 103357 0.7 0.3007
Target:  5'- -aCgGGGCCaacgcgUCCGUGCCCCAGcCUGa -3'
miRNA:   3'- agGgCCCGGa-----GGGCGCGGGGUCaGAU- -5'
3663 3' -66.1 NC_001650.1 + 146673 0.69 0.313863
Target:  5'- gCCCGGGCCgCCUaGgGCCgCgGGUCUAu -3'
miRNA:   3'- aGGGCCCGGaGGG-CgCGG-GgUCAGAU- -5'
3663 3' -66.1 NC_001650.1 + 164641 0.69 0.313863
Target:  5'- cCCCGGGCCgcgcggcaCCCGgGCuCCCGGg--- -3'
miRNA:   3'- aGGGCCCGGa-------GGGCgCG-GGGUCagau -5'
3663 3' -66.1 NC_001650.1 + 50176 0.68 0.363323
Target:  5'- -gCUGGGCCggggCUCGCGUCCCGGg--- -3'
miRNA:   3'- agGGCCCGGa---GGGCGCGGGGUCagau -5'
3663 3' -66.1 NC_001650.1 + 79402 0.68 0.363323
Target:  5'- cCCCGGGuCCUCCaGCGCCCgauGGUg-- -3'
miRNA:   3'- aGGGCCC-GGAGGgCGCGGGg--UCAgau -5'
3663 3' -66.1 NC_001650.1 + 50333 0.68 0.370816
Target:  5'- cUCCCGgccccGGCCUCCuCGaGCCCCGGg--- -3'
miRNA:   3'- -AGGGC-----CCGGAGG-GCgCGGGGUCagau -5'
3663 3' -66.1 NC_001650.1 + 52691 0.68 0.370816
Target:  5'- aCuuGGGCCUCUCGgGCCgCAG-Cg- -3'
miRNA:   3'- aGggCCCGGAGGGCgCGGgGUCaGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.