miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3663 3' -66.1 NC_001650.1 + 609 0.66 0.503925
Target:  5'- -gCCGGGCUgccgcccuccCCCGgGCCCCcauuGGUCg- -3'
miRNA:   3'- agGGCCCGGa---------GGGCgCGGGG----UCAGau -5'
3663 3' -66.1 NC_001650.1 + 4943 0.66 0.498537
Target:  5'- uUCCCcgagccgggcacggaGGGCCUCCgGaGCCCCAuggCUGg -3'
miRNA:   3'- -AGGG---------------CCCGGAGGgCgCGGGGUca-GAU- -5'
3663 3' -66.1 NC_001650.1 + 11743 0.66 0.512959
Target:  5'- cUCCCGuGGaCCUCaCCGCGaCCaCCGGg--- -3'
miRNA:   3'- -AGGGC-CC-GGAG-GGCGC-GG-GGUCagau -5'
3663 3' -66.1 NC_001650.1 + 21938 0.67 0.417932
Target:  5'- cUCCCcGGCCUCCUucuGCGgacCCCCGG-CUAc -3'
miRNA:   3'- -AGGGcCCGGAGGG---CGC---GGGGUCaGAU- -5'
3663 3' -66.1 NC_001650.1 + 22532 0.7 0.275664
Target:  5'- aCCgGGGCCaCCCGCGCCuCCA-UCa- -3'
miRNA:   3'- aGGgCCCGGaGGGCGCGG-GGUcAGau -5'
3663 3' -66.1 NC_001650.1 + 22583 0.67 0.417932
Target:  5'- gUCCGGGgCggCgGCGCCUCGGUCUu -3'
miRNA:   3'- aGGGCCCgGagGgCGCGGGGUCAGAu -5'
3663 3' -66.1 NC_001650.1 + 27594 0.66 0.468516
Target:  5'- uUCCCGGGCgUgCC-CGCCUCGGcccUCUc -3'
miRNA:   3'- -AGGGCCCGgAgGGcGCGGGGUC---AGAu -5'
3663 3' -66.1 NC_001650.1 + 29752 0.68 0.378413
Target:  5'- cCCCaGGCgg-CCGCGCCCCAGUa-- -3'
miRNA:   3'- aGGGcCCGgagGGCGCGGGGUCAgau -5'
3663 3' -66.1 NC_001650.1 + 35844 0.7 0.3007
Target:  5'- aCCCGGuacaCCUCCCGCGCCUCGa---- -3'
miRNA:   3'- aGGGCCc---GGAGGGCGCGGGGUcagau -5'
3663 3' -66.1 NC_001650.1 + 41620 0.66 0.486067
Target:  5'- cCCCGGGUUUcaggggggCCCGCgugGCUCCAGUUUu -3'
miRNA:   3'- aGGGCCCGGA--------GGGCG---CGGGGUCAGAu -5'
3663 3' -66.1 NC_001650.1 + 46575 0.73 0.187553
Target:  5'- cCCCGcGGCCgaugcggCgCCGCGCCCCGGcUCg- -3'
miRNA:   3'- aGGGC-CCGGa------G-GGCGCGGGGUC-AGau -5'
3663 3' -66.1 NC_001650.1 + 47221 0.67 0.426133
Target:  5'- aUUUgGGGUCUCgCGCGCgCaCCAGUCUc -3'
miRNA:   3'- -AGGgCCCGGAGgGCGCG-G-GGUCAGAu -5'
3663 3' -66.1 NC_001650.1 + 50176 0.68 0.363323
Target:  5'- -gCUGGGCCggggCUCGCGUCCCGGg--- -3'
miRNA:   3'- agGGCCCGGa---GGGCGCGGGGUCagau -5'
3663 3' -66.1 NC_001650.1 + 50333 0.68 0.370816
Target:  5'- cUCCCGgccccGGCCUCCuCGaGCCCCGGg--- -3'
miRNA:   3'- -AGGGC-----CCGGAGG-GCgCGGGGUCagau -5'
3663 3' -66.1 NC_001650.1 + 50469 0.66 0.468516
Target:  5'- cUCCCGGGCg-CagagagGCGCCCCuGUCg- -3'
miRNA:   3'- -AGGGCCCGgaGgg----CGCGGGGuCAGau -5'
3663 3' -66.1 NC_001650.1 + 50819 0.67 0.442817
Target:  5'- uUCUCGGGCa--CCGCgGCCCCGG-Cg- -3'
miRNA:   3'- -AGGGCCCGgagGGCG-CGGGGUCaGau -5'
3663 3' -66.1 NC_001650.1 + 51228 0.7 0.26967
Target:  5'- aCCUugaucugagaggGGGCCgccgcgCCCGCGCCCCcGUCc- -3'
miRNA:   3'- aGGG------------CCCGGa-----GGGCGCGGGGuCAGau -5'
3663 3' -66.1 NC_001650.1 + 51757 0.67 0.459863
Target:  5'- cUCUCGGGUCUUCacaGCCUCAGUCc- -3'
miRNA:   3'- -AGGGCCCGGAGGgcgCGGGGUCAGau -5'
3663 3' -66.1 NC_001650.1 + 52691 0.68 0.370816
Target:  5'- aCuuGGGCCUCUCGgGCCgCAG-Cg- -3'
miRNA:   3'- aGggCCCGGAGGGCgCGGgGUCaGau -5'
3663 3' -66.1 NC_001650.1 + 58105 0.75 0.131404
Target:  5'- aCCCGGGCUacuaUCCCGCGCCCUAc---- -3'
miRNA:   3'- aGGGCCCGG----AGGGCGCGGGGUcagau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.