miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3663 3' -66.1 NC_001650.1 + 134329 0.66 0.477252
Target:  5'- cCCCGGcGCCcCCCGCggGCCCUccguGUCc- -3'
miRNA:   3'- aGGGCC-CGGaGGGCG--CGGGGu---CAGau -5'
3663 3' -66.1 NC_001650.1 + 29752 0.68 0.378413
Target:  5'- cCCCaGGCgg-CCGCGCCCCAGUa-- -3'
miRNA:   3'- aGGGcCCGgagGGCGCGGGGUCAgau -5'
3663 3' -66.1 NC_001650.1 + 145973 0.68 0.401823
Target:  5'- gUCCCGGGaCCcgUUgGCGUCCCAGaUCUu -3'
miRNA:   3'- -AGGGCCC-GGa-GGgCGCGGGGUC-AGAu -5'
3663 3' -66.1 NC_001650.1 + 21938 0.67 0.417932
Target:  5'- cUCCCcGGCCUCCUucuGCGgacCCCCGG-CUAc -3'
miRNA:   3'- -AGGGcCCGGAGGG---CGC---GGGGUCaGAU- -5'
3663 3' -66.1 NC_001650.1 + 22583 0.67 0.417932
Target:  5'- gUCCGGGgCggCgGCGCCUCGGUCUu -3'
miRNA:   3'- aGGGCCCgGagGgCGCGGGGUCAGAu -5'
3663 3' -66.1 NC_001650.1 + 111148 0.67 0.43193
Target:  5'- cCCCGGGcCCUCUCagggagggugugagGCggGUCCCAGUCa- -3'
miRNA:   3'- aGGGCCC-GGAGGG--------------CG--CGGGGUCAGau -5'
3663 3' -66.1 NC_001650.1 + 50819 0.67 0.442817
Target:  5'- uUCUCGGGCa--CCGCgGCCCCGG-Cg- -3'
miRNA:   3'- -AGGGCCCGgagGGCG-CGGGGUCaGau -5'
3663 3' -66.1 NC_001650.1 + 132555 0.67 0.442817
Target:  5'- cCCCGGGCgaCgCGC-CCCCGGUg-- -3'
miRNA:   3'- aGGGCCCGgaGgGCGcGGGGUCAgau -5'
3663 3' -66.1 NC_001650.1 + 27594 0.66 0.468516
Target:  5'- uUCCCGGGCgUgCC-CGCCUCGGcccUCUc -3'
miRNA:   3'- -AGGGCCCGgAgGGcGCGGGGUC---AGAu -5'
3663 3' -66.1 NC_001650.1 + 50333 0.68 0.370816
Target:  5'- cUCCCGgccccGGCCUCCuCGaGCCCCGGg--- -3'
miRNA:   3'- -AGGGC-----CCGGAGG-GCgCGGGGUCagau -5'
3663 3' -66.1 NC_001650.1 + 52691 0.68 0.370816
Target:  5'- aCuuGGGCCUCUCGgGCCgCAG-Cg- -3'
miRNA:   3'- aGggCCCGGAGGGCgCGGgGUCaGau -5'
3663 3' -66.1 NC_001650.1 + 50176 0.68 0.363323
Target:  5'- -gCUGGGCCggggCUCGCGUCCCGGg--- -3'
miRNA:   3'- agGGCCCGGa---GGGCGCGGGGUCagau -5'
3663 3' -66.1 NC_001650.1 + 164913 0.74 0.166809
Target:  5'- cCCCGGGCCcCaCCGCggccGCCgCCAGUCUc -3'
miRNA:   3'- aGGGCCCGGaG-GGCG----CGG-GGUCAGAu -5'
3663 3' -66.1 NC_001650.1 + 68750 0.73 0.170786
Target:  5'- gCCCGGGUCUCCCGgggggcguacuUGCCCCuGUUg- -3'
miRNA:   3'- aGGGCCCGGAGGGC-----------GCGGGGuCAGau -5'
3663 3' -66.1 NC_001650.1 + 109360 0.71 0.246746
Target:  5'- gCCCGGGCCUCCCggacgcggacGgGCCCCuGg--- -3'
miRNA:   3'- aGGGCCCGGAGGG----------CgCGGGGuCagau -5'
3663 3' -66.1 NC_001650.1 + 61144 0.7 0.26967
Target:  5'- cCCCGGGUCcCCCGcCGCCCCcauGaCUAu -3'
miRNA:   3'- aGGGCCCGGaGGGC-GCGGGGu--CaGAU- -5'
3663 3' -66.1 NC_001650.1 + 22532 0.7 0.275664
Target:  5'- aCCgGGGCCaCCCGCGCCuCCA-UCa- -3'
miRNA:   3'- aGGgCCCGGaGGGCGCGG-GGUcAGau -5'
3663 3' -66.1 NC_001650.1 + 88953 0.7 0.29428
Target:  5'- uUCgaGGGCCUCCCGCcgGCCCUccUCUAc -3'
miRNA:   3'- -AGggCCCGGAGGGCG--CGGGGucAGAU- -5'
3663 3' -66.1 NC_001650.1 + 103357 0.7 0.3007
Target:  5'- -aCgGGGCCaacgcgUCCGUGCCCCAGcCUGa -3'
miRNA:   3'- agGgCCCGGa-----GGGCGCGGGGUCaGAU- -5'
3663 3' -66.1 NC_001650.1 + 164641 0.69 0.313863
Target:  5'- cCCCGGGCCgcgcggcaCCCGgGCuCCCGGg--- -3'
miRNA:   3'- aGGGCCCGGa-------GGGCgCG-GGGUCagau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.