miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3663 5' -50.9 NC_001650.1 + 117664 0.67 0.990893
Target:  5'- --cGGGCGUGg--GGCacACCCCGcccAGGa -3'
miRNA:   3'- gcaCCUGCACaaaUCGa-UGGGGU---UCC- -5'
3663 5' -50.9 NC_001650.1 + 122391 0.67 0.992039
Target:  5'- uCGUGGAaGUGguccAGCaggUugCCCAGGGc -3'
miRNA:   3'- -GCACCUgCACaaa-UCG---AugGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 124095 0.67 0.992039
Target:  5'- aCGUGGGCGacgcugUUGGCgAUCCCGGGc -3'
miRNA:   3'- -GCACCUGCaca---AAUCGaUGGGGUUCc -5'
3663 5' -50.9 NC_001650.1 + 59972 0.67 0.993066
Target:  5'- gCGUGucCGUGgggGGCgccucgcCCCCGGGGg -3'
miRNA:   3'- -GCACcuGCACaaaUCGau-----GGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 113741 0.67 0.993066
Target:  5'- gCGUGGGCGggaugGGgUACCCCucccguAAGGc -3'
miRNA:   3'- -GCACCUGCacaaaUCgAUGGGG------UUCC- -5'
3663 5' -50.9 NC_001650.1 + 73553 0.67 0.993447
Target:  5'- --cGGACGUGUccuaCUuucaguccuccaacaGCCCCAGGGg -3'
miRNA:   3'- gcaCCUGCACAaaucGA---------------UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 129902 0.67 0.994804
Target:  5'- cCGUGaGCuUGgacAGCUGCCCCGGGa -3'
miRNA:   3'- -GCACcUGcACaaaUCGAUGGGGUUCc -5'
3663 5' -50.9 NC_001650.1 + 50704 0.66 0.995529
Target:  5'- gGUGGugGUaagugaaaguugGggUAGC-GCCCCGcgAGGa -3'
miRNA:   3'- gCACCugCA------------CaaAUCGaUGGGGU--UCC- -5'
3663 5' -50.9 NC_001650.1 + 94855 0.66 0.995529
Target:  5'- cCGUGGugGUGgucgAGgacCCCCAcGGg -3'
miRNA:   3'- -GCACCugCACaaa-UCgauGGGGUuCC- -5'
3663 5' -50.9 NC_001650.1 + 129935 0.66 0.995529
Target:  5'- --cGGACGUGUacgaGGCUguggcgggcacGCCCCugGAGGc -3'
miRNA:   3'- gcaCCUGCACAaa--UCGA-----------UGGGG--UUCC- -5'
3663 5' -50.9 NC_001650.1 + 157499 0.66 0.995986
Target:  5'- gCGgGGGCGgggagGUgcccccaggcgcaugGGCUacaGCCCCGAGGg -3'
miRNA:   3'- -GCaCCUGCa----CAaa-------------UCGA---UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 101682 0.66 0.996405
Target:  5'- --cGGACGUGagccccuuccuGCagaACCCCGAGGa -3'
miRNA:   3'- gcaCCUGCACaaau-------CGa--UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 81806 0.66 0.996734
Target:  5'- uGUGcGGCGaccucgcGUcgGGCgACCCCGAGGc -3'
miRNA:   3'- gCAC-CUGCa------CAaaUCGaUGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 5638 0.66 0.996734
Target:  5'- aGUGGGCGgcccccUUAGac-CCCCGGGGc -3'
miRNA:   3'- gCACCUGCaca---AAUCgauGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 172345 0.66 0.996734
Target:  5'- aGUGGGCGgcccccUUAGac-CCCCGGGGc -3'
miRNA:   3'- gCACCUGCaca---AAUCgauGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 36087 0.66 0.996734
Target:  5'- gGUGGAgGUGUaccAG-UGCCCCucGGa -3'
miRNA:   3'- gCACCUgCACAaa-UCgAUGGGGuuCC- -5'
3663 5' -50.9 NC_001650.1 + 146942 0.66 0.996734
Target:  5'- aCGUaGGCGaccgGg--GGCUgACCCCGAGGu -3'
miRNA:   3'- -GCAcCUGCa---CaaaUCGA-UGGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 141856 0.66 0.997134
Target:  5'- -cUGGGgGUGUUUuGCUucgcgcgggggcCCCCGAGGc -3'
miRNA:   3'- gcACCUgCACAAAuCGAu-----------GGGGUUCC- -5'
3663 5' -50.9 NC_001650.1 + 44016 0.66 0.997227
Target:  5'- -aUGGACacGg--AGCUGCCCCuuGGGa -3'
miRNA:   3'- gcACCUGcaCaaaUCGAUGGGGu-UCC- -5'
3663 5' -50.9 NC_001650.1 + 31302 0.66 0.997227
Target:  5'- aCGgGGGCGcuucauGCgACCCCAGGGa -3'
miRNA:   3'- -GCaCCUGCacaaauCGaUGGGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.