Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 106373 | 0.66 | 0.733792 |
Target: 5'- cUCUGCCCCugcgaguCCAGgUUG-CCCgcCUCg -3' miRNA: 3'- cAGACGGGGu------GGUCgAACcGGGa-GAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 156202 | 0.66 | 0.724199 |
Target: 5'- -aCUGCCCgGCCAG---GGCCaUCUCc -3' miRNA: 3'- caGACGGGgUGGUCgaaCCGGgAGAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 133565 | 0.66 | 0.724199 |
Target: 5'- gGUCagGCCCCccGCgGGCaccGGCCC-CUCg -3' miRNA: 3'- -CAGa-CGGGG--UGgUCGaa-CCGGGaGAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 71978 | 0.66 | 0.714531 |
Target: 5'- aUCUGCCagCACCugGGCggggcGGCCgUCUCc -3' miRNA: 3'- cAGACGGg-GUGG--UCGaa---CCGGgAGAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 156629 | 0.66 | 0.704796 |
Target: 5'- ---cGCCCUcuCCAGCUgGGCCCUgUa -3' miRNA: 3'- cagaCGGGGu-GGUCGAaCCGGGAgAg -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 38711 | 0.66 | 0.698926 |
Target: 5'- ---aGCCCCugaagcuCCAGCUgaccaggagcccccGGCCCUUUCc -3' miRNA: 3'- cagaCGGGGu------GGUCGAa-------------CCGGGAGAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 130982 | 0.66 | 0.695002 |
Target: 5'- cGUCUucgaggcggcGCCCCugUcGCg-GGCCCUCUa -3' miRNA: 3'- -CAGA----------CGGGGugGuCGaaCCGGGAGAg -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 113583 | 0.66 | 0.695002 |
Target: 5'- gGUgUGCUCCACCAGgUgGGCCUUg-- -3' miRNA: 3'- -CAgACGGGGUGGUCgAaCCGGGAgag -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 56330 | 0.66 | 0.68516 |
Target: 5'- cUUUGCCCCuugcuCCAGUUUGcagguuCCCUCUUu -3' miRNA: 3'- cAGACGGGGu----GGUCGAACc-----GGGAGAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 105896 | 0.66 | 0.68516 |
Target: 5'- -cCUGauCUCgGCCAGCUUGccGUCCUCUCu -3' miRNA: 3'- caGAC--GGGgUGGUCGAAC--CGGGAGAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 157305 | 0.66 | 0.68516 |
Target: 5'- cUCUaCCaCCACCAGC-UGGCcgcgguacagCCUCUCc -3' miRNA: 3'- cAGAcGG-GGUGGUCGaACCG----------GGAGAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 162849 | 0.67 | 0.675275 |
Target: 5'- aGUCgcgcGCCCC-CCuc--UGGCCCUCUUa -3' miRNA: 3'- -CAGa---CGGGGuGGucgaACCGGGAGAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 68964 | 0.67 | 0.675275 |
Target: 5'- -cCUGCCCgGCCuGGCUccggGGuCCUUCUUg -3' miRNA: 3'- caGACGGGgUGG-UCGAa---CC-GGGAGAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 122743 | 0.67 | 0.665356 |
Target: 5'- uUCUcCCUgACCGGCacuucggGGCCCUCUUc -3' miRNA: 3'- cAGAcGGGgUGGUCGaa-----CCGGGAGAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 95010 | 0.67 | 0.665356 |
Target: 5'- -gUUGCCgCCGCCcGCccUGGCCCgcCUCa -3' miRNA: 3'- caGACGG-GGUGGuCGa-ACCGGGa-GAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 108907 | 0.67 | 0.655413 |
Target: 5'- -cCUGCgUCCACUAcGCggagcUGGCCUUCUCc -3' miRNA: 3'- caGACG-GGGUGGU-CGa----ACCGGGAGAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 153208 | 0.67 | 0.645451 |
Target: 5'- ---cGCCCCccgccCCAGCcaGGCCCUgCUCc -3' miRNA: 3'- cagaCGGGGu----GGUCGaaCCGGGA-GAG- -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 173235 | 0.68 | 0.615536 |
Target: 5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3' miRNA: 3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 6651 | 0.68 | 0.615536 |
Target: 5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3' miRNA: 3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5' |
|||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 6528 | 0.68 | 0.615536 |
Target: 5'- aGUCUGCCCagcaACCAG---GGCCUUCa- -3' miRNA: 3'- -CAGACGGGg---UGGUCgaaCCGGGAGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home