Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 111497 | 1.09 | 0.000976 |
Target: 5'- cGUCUGCCCCACCAGCUUGGCCCUCUCg -3' miRNA: 3'- -CAGACGGGGUGGUCGAACCGGGAGAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 113583 | 0.66 | 0.695002 |
Target: 5'- gGUgUGCUCCACCAGgUgGGCCUUg-- -3' miRNA: 3'- -CAgACGGGGUGGUCgAaCCGGGAgag -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 38711 | 0.66 | 0.698926 |
Target: 5'- ---aGCCCCugaagcuCCAGCUgaccaggagcccccGGCCCUUUCc -3' miRNA: 3'- cagaCGGGGu------GGUCGAa-------------CCGGGAGAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 106373 | 0.66 | 0.733792 |
Target: 5'- cUCUGCCCCugcgaguCCAGgUUG-CCCgcCUCg -3' miRNA: 3'- cAGACGGGGu------GGUCgAACcGGGa-GAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 106339 | 0.71 | 0.426383 |
Target: 5'- cGUgaGCUCCaggACCAGCgcGGCCUUCUCc -3' miRNA: 3'- -CAgaCGGGG---UGGUCGaaCCGGGAGAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 130520 | 0.71 | 0.443876 |
Target: 5'- ---cGCUCUgauuggucgagaGCCGGC-UGGCCCUCUCg -3' miRNA: 3'- cagaCGGGG------------UGGUCGaACCGGGAGAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 107368 | 0.7 | 0.498635 |
Target: 5'- -gCUGCagaUCGCCAGCUgcgcggcGGCCCUCa- -3' miRNA: 3'- caGACGg--GGUGGUCGAa------CCGGGAGag -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 52066 | 0.69 | 0.53676 |
Target: 5'- cUCcGCCCCGCCGGCcucgguggGGCCCa--- -3' miRNA: 3'- cAGaCGGGGUGGUCGaa------CCGGGagag -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 153208 | 0.67 | 0.645451 |
Target: 5'- ---cGCCCCccgccCCAGCcaGGCCCUgCUCc -3' miRNA: 3'- cagaCGGGGu----GGUCGaaCCGGGA-GAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 162849 | 0.67 | 0.675275 |
Target: 5'- aGUCgcgcGCCCC-CCuc--UGGCCCUCUUa -3' miRNA: 3'- -CAGa---CGGGGuGGucgaACCGGGAGAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 54710 | 0.69 | 0.546454 |
Target: 5'- cUCgGCCuCCuucuCCAGCUUGGCCUccgccucccucaUCUCc -3' miRNA: 3'- cAGaCGG-GGu---GGUCGAACCGGG------------AGAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 160187 | 0.77 | 0.179928 |
Target: 5'- cGUCgUGCCCCgagacgGCCAGCcucUUGGCCCUCa- -3' miRNA: 3'- -CAG-ACGGGG------UGGUCG---AACCGGGAGag -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 105896 | 0.66 | 0.68516 |
Target: 5'- -cCUGauCUCgGCCAGCUUGccGUCCUCUCu -3' miRNA: 3'- caGAC--GGGgUGGUCGAAC--CGGGAGAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 59988 | 0.74 | 0.282539 |
Target: 5'- uUCUGCCUccucuuCACCAGCUucUGGCCCacCUCu -3' miRNA: 3'- cAGACGGG------GUGGUCGA--ACCGGGa-GAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 135932 | 0.69 | 0.546454 |
Target: 5'- -cUUGgC-CACCAGCUUGGCCCUgUg -3' miRNA: 3'- caGACgGgGUGGUCGAACCGGGAgAg -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 157305 | 0.66 | 0.68516 |
Target: 5'- cUCUaCCaCCACCAGC-UGGCcgcgguacagCCUCUCc -3' miRNA: 3'- cAGAcGG-GGUGGUCGaACCG----------GGAGAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 133565 | 0.66 | 0.724199 |
Target: 5'- gGUCagGCCCCccGCgGGCaccGGCCC-CUCg -3' miRNA: 3'- -CAGa-CGGGG--UGgUCGaa-CCGGGaGAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 153388 | 0.72 | 0.384507 |
Target: 5'- gGUgUGCCCCGCCAGCacgcucagGGagCUCUCg -3' miRNA: 3'- -CAgACGGGGUGGUCGaa------CCggGAGAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 135035 | 0.7 | 0.461765 |
Target: 5'- ---cGCCCUcgGCCAGCgcgcGGCCCUCg- -3' miRNA: 3'- cagaCGGGG--UGGUCGaa--CCGGGAGag -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 95010 | 0.67 | 0.665356 |
Target: 5'- -gUUGCCgCCGCCcGCccUGGCCCgcCUCa -3' miRNA: 3'- caGACGG-GGUGGuCGa-ACCGGGa-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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