miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3686 3' -56 NC_001650.1 + 84964 0.66 0.912402
Target:  5'- ---gGCGAagGUgaGGAGGAGGGCgauGGCg -3'
miRNA:   3'- guugUGCUagCGg-UCUCCUCCCG---UCG- -5'
3686 3' -56 NC_001650.1 + 163207 0.66 0.912402
Target:  5'- uCAGcCACGGgggUGCCAGAguGGuuGGCGGUg -3'
miRNA:   3'- -GUU-GUGCUa--GCGGUCU--CCucCCGUCG- -5'
3686 3' -56 NC_001650.1 + 71963 0.66 0.923676
Target:  5'- -cACAUGAUaaaguucaucUGCCAGcaccuGGGcGGGGCGGCc -3'
miRNA:   3'- guUGUGCUA----------GCGGUC-----UCC-UCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 127379 0.66 0.916454
Target:  5'- aCGACGucccCGAgccCGCCAGGagccccgagagcccGGAccuGGGCAGCg -3'
miRNA:   3'- -GUUGU----GCUa--GCGGUCU--------------CCU---CCCGUCG- -5'
3686 3' -56 NC_001650.1 + 119540 0.66 0.918155
Target:  5'- --uCACcgGGUCGCCcGAGGGgGGGUAGg -3'
miRNA:   3'- guuGUG--CUAGCGGuCUCCU-CCCGUCg -5'
3686 3' -56 NC_001650.1 + 88286 0.66 0.923676
Target:  5'- aCAACGagugGAUCGCggcccUGGAGGGGcGCGGCg -3'
miRNA:   3'- -GUUGUg---CUAGCG-----GUCUCCUCcCGUCG- -5'
3686 3' -56 NC_001650.1 + 83258 0.66 0.922044
Target:  5'- gCGACGCGGUCGCggaccucagGGAGGAGuuugaccuggagcuGGaCAGCc -3'
miRNA:   3'- -GUUGUGCUAGCGg--------UCUCCUC--------------CC-GUCG- -5'
3686 3' -56 NC_001650.1 + 133874 0.66 0.918155
Target:  5'- uGGCAgCGGUCGCCucuAGAGGccgccccuGGGaccGCGGCg -3'
miRNA:   3'- gUUGU-GCUAGCGG---UCUCC--------UCC---CGUCG- -5'
3686 3' -56 NC_001650.1 + 30780 0.66 0.918155
Target:  5'- gGGCAgGGggaCG-CGGGGGAcgGGGCGGCg -3'
miRNA:   3'- gUUGUgCUa--GCgGUCUCCU--CCCGUCG- -5'
3686 3' -56 NC_001650.1 + 79985 0.66 0.928444
Target:  5'- aGACAUccagaucacaguaGGUCGCUauggcuagcGGGGGAGuaGGCGGCa -3'
miRNA:   3'- gUUGUG-------------CUAGCGG---------UCUCCUC--CCGUCG- -5'
3686 3' -56 NC_001650.1 + 183378 0.66 0.938834
Target:  5'- ---gGCuGUUGCCAGGcagaccccGGGGGGguGCg -3'
miRNA:   3'- guugUGcUAGCGGUCU--------CCUCCCguCG- -5'
3686 3' -56 NC_001650.1 + 71777 0.66 0.912402
Target:  5'- gGACGCGGcCaCCauAGAGGuGGuGCAGCa -3'
miRNA:   3'- gUUGUGCUaGcGG--UCUCCuCC-CGUCG- -5'
3686 3' -56 NC_001650.1 + 46120 0.66 0.912402
Target:  5'- aCAGCuCGAgcgGCCAauGGGGAGcGaGCAGCa -3'
miRNA:   3'- -GUUGuGCUag-CGGU--CUCCUC-C-CGUCG- -5'
3686 3' -56 NC_001650.1 + 29374 0.66 0.934015
Target:  5'- aGGCGCag-CGuCCAGGGGGcGGCGGUg -3'
miRNA:   3'- gUUGUGcuaGC-GGUCUCCUcCCGUCG- -5'
3686 3' -56 NC_001650.1 + 48113 0.66 0.932022
Target:  5'- aCAGCAgGAUgGCCAGGGGGuccaugacccccGCGGCc -3'
miRNA:   3'- -GUUGUgCUAgCGGUCUCCUcc----------CGUCG- -5'
3686 3' -56 NC_001650.1 + 81603 0.66 0.934015
Target:  5'- cCGACGCGAggUCGCCGcacAGGGcgcgcgccgcgcGGGcCAGCu -3'
miRNA:   3'- -GUUGUGCU--AGCGGUc--UCCU------------CCC-GUCG- -5'
3686 3' -56 NC_001650.1 + 3292 0.66 0.938834
Target:  5'- uGGC-CGGUagggGCCAcgugguGAGGAGcGGCGGCc -3'
miRNA:   3'- gUUGuGCUAg---CGGU------CUCCUC-CCGUCG- -5'
3686 3' -56 NC_001650.1 + 142630 0.66 0.928962
Target:  5'- gCAGCA-GGcCGgCGGAGGGGGcuGCGGCu -3'
miRNA:   3'- -GUUGUgCUaGCgGUCUCCUCC--CGUCG- -5'
3686 3' -56 NC_001650.1 + 169999 0.66 0.938834
Target:  5'- uGGC-CGGUagggGCCAcgugguGAGGAGcGGCGGCc -3'
miRNA:   3'- gUUGuGCUAg---CGGU------CUCCUC-CCGUCG- -5'
3686 3' -56 NC_001650.1 + 21500 0.66 0.912402
Target:  5'- uGACuAUGGgugCGCCGGgaccGGGGGGGCuacuGCu -3'
miRNA:   3'- gUUG-UGCUa--GCGGUC----UCCUCCCGu---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.