miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3686 3' -56 NC_001650.1 + 108738 1.1 0.00287
Target:  5'- gCAACACGAUCGCCAGAGGAGGGCAGCc -3'
miRNA:   3'- -GUUGUGCUAGCGGUCUCCUCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 30677 0.8 0.265942
Target:  5'- gGACGCGcgCGCCgcggggcgagcgGGAGGGGGGCGGg -3'
miRNA:   3'- gUUGUGCuaGCGG------------UCUCCUCCCGUCg -5'
3686 3' -56 NC_001650.1 + 125009 0.79 0.285215
Target:  5'- aGGCucuCGAUCGCCAGAGGgggucccgGGGGCGGa -3'
miRNA:   3'- gUUGu--GCUAGCGGUCUCC--------UCCCGUCg -5'
3686 3' -56 NC_001650.1 + 29045 0.78 0.333677
Target:  5'- gGGCAUGAUCGCCcuccacuaccacgGGAGGAGGGCccAGg -3'
miRNA:   3'- gUUGUGCUAGCGG-------------UCUCCUCCCG--UCg -5'
3686 3' -56 NC_001650.1 + 115274 0.78 0.349577
Target:  5'- gGGCAgGGUgguaGCCAggGAGGGGGGCGGCg -3'
miRNA:   3'- gUUGUgCUAg---CGGU--CUCCUCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 159686 0.78 0.357336
Target:  5'- cCAGCGCG---GCCAGGGGguaGGGGCAGCc -3'
miRNA:   3'- -GUUGUGCuagCGGUCUCC---UCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 35593 0.77 0.365215
Target:  5'- cCGGCGCGugcgagCGCCuGGGGGAGGGUGGUg -3'
miRNA:   3'- -GUUGUGCua----GCGG-UCUCCUCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 16896 0.77 0.389562
Target:  5'- cCAAUggGggC-CCGGGGGAGGGCGGCa -3'
miRNA:   3'- -GUUGugCuaGcGGUCUCCUCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 183603 0.77 0.389562
Target:  5'- cCAAUggGggC-CCGGGGGAGGGCGGCa -3'
miRNA:   3'- -GUUGugCuaGcGGUCUCCUCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 128731 0.74 0.515941
Target:  5'- aCAuCACGuccCGCgAGGGGAGGGgGGCg -3'
miRNA:   3'- -GUuGUGCua-GCGgUCUCCUCCCgUCG- -5'
3686 3' -56 NC_001650.1 + 111089 0.74 0.525641
Target:  5'- ---aGCGG-CGCCAGGcGcGAGGGCGGCg -3'
miRNA:   3'- guugUGCUaGCGGUCU-C-CUCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 122127 0.74 0.54524
Target:  5'- gGGCGgGGUCgGCuCGGGGGcgGGGGCGGCg -3'
miRNA:   3'- gUUGUgCUAG-CG-GUCUCC--UCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 21370 0.73 0.565069
Target:  5'- -----aGAggGCCAGAGGGGGGCGcGCg -3'
miRNA:   3'- guugugCUagCGGUCUCCUCCCGU-CG- -5'
3686 3' -56 NC_001650.1 + 50051 0.73 0.565069
Target:  5'- ----gUGAUCGCguGGGGAGGGCcGCc -3'
miRNA:   3'- guuguGCUAGCGguCUCCUCCCGuCG- -5'
3686 3' -56 NC_001650.1 + 79102 0.73 0.575055
Target:  5'- gGGCGCGGcCGCUcggcgggcgGGAGGAGGGcCAGUc -3'
miRNA:   3'- gUUGUGCUaGCGG---------UCUCCUCCC-GUCG- -5'
3686 3' -56 NC_001650.1 + 52420 0.73 0.585081
Target:  5'- gAACAgGAagGCCcuGGGGGGaGGCAGCg -3'
miRNA:   3'- gUUGUgCUagCGGu-CUCCUC-CCGUCG- -5'
3686 3' -56 NC_001650.1 + 65450 0.73 0.585081
Target:  5'- --cUACGugcugCGCaccgaGGAGGGGGGCGGCg -3'
miRNA:   3'- guuGUGCua---GCGg----UCUCCUCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 124070 0.73 0.585081
Target:  5'- cCAACGCGAUCcagguggacguGUCAGAGGccgacgGGGGCGGa -3'
miRNA:   3'- -GUUGUGCUAG-----------CGGUCUCC------UCCCGUCg -5'
3686 3' -56 NC_001650.1 + 66868 0.73 0.615332
Target:  5'- --cCGCGGgaggCGCCGGGGGcgGGGGCgAGCc -3'
miRNA:   3'- guuGUGCUa---GCGGUCUCC--UCCCG-UCG- -5'
3686 3' -56 NC_001650.1 + 69225 0.72 0.625449
Target:  5'- -cGCGCGggCGCUGGAGGccgGGGGCgAGUa -3'
miRNA:   3'- guUGUGCuaGCGGUCUCC---UCCCG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.