miRNA display CGI


Results 1 - 20 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3686 3' -56 NC_001650.1 + 3292 0.66 0.938834
Target:  5'- uGGC-CGGUagggGCCAcgugguGAGGAGcGGCGGCc -3'
miRNA:   3'- gUUGuGCUAg---CGGU------CUCCUC-CCGUCG- -5'
3686 3' -56 NC_001650.1 + 3587 0.67 0.880208
Target:  5'- --cCAUGGUC-CCGGGGGuccAGGGgGGCg -3'
miRNA:   3'- guuGUGCUAGcGGUCUCC---UCCCgUCG- -5'
3686 3' -56 NC_001650.1 + 9293 0.66 0.912402
Target:  5'- aGGCAU--UgGCCGGuGGAGGGCcuaGGCc -3'
miRNA:   3'- gUUGUGcuAgCGGUCuCCUCCCG---UCG- -5'
3686 3' -56 NC_001650.1 + 14951 0.68 0.833722
Target:  5'- ---gGCGGUUGCCGGGcagauuugggaguGGGGGuGCAGUa -3'
miRNA:   3'- guugUGCUAGCGGUCU-------------CCUCC-CGUCG- -5'
3686 3' -56 NC_001650.1 + 15094 0.68 0.840231
Target:  5'- ---gGCGGUUGCCGGGcagauuuagggaguGGGGGuGCAGUa -3'
miRNA:   3'- guugUGCUAGCGGUCU--------------CCUCC-CGUCG- -5'
3686 3' -56 NC_001650.1 + 15247 0.66 0.918155
Target:  5'- gGGCAgGGUUcaGUguGGGGGGGuGCAGUa -3'
miRNA:   3'- gUUGUgCUAG--CGguCUCCUCC-CGUCG- -5'
3686 3' -56 NC_001650.1 + 15326 0.69 0.791493
Target:  5'- -uGCACGGggGgCAGAGGAGGuaAGUg -3'
miRNA:   3'- guUGUGCUagCgGUCUCCUCCcgUCG- -5'
3686 3' -56 NC_001650.1 + 15810 0.69 0.788789
Target:  5'- ---gGCGGUUGCCAGgcaggguuuagaguGGGGGGuGCGGUa -3'
miRNA:   3'- guugUGCUAGCGGUC--------------UCCUCC-CGUCG- -5'
3686 3' -56 NC_001650.1 + 16293 0.67 0.904576
Target:  5'- ---gGCGGUUGCCAGGcagauuagguuaauGuGGGGGguGCg -3'
miRNA:   3'- guugUGCUAGCGGUCU--------------C-CUCCCguCG- -5'
3686 3' -56 NC_001650.1 + 16671 0.66 0.938834
Target:  5'- ---gGCuGUUGCCAGGcagaccccGGGGGGguGCg -3'
miRNA:   3'- guugUGcUAGCGGUCU--------CCUCCCguCG- -5'
3686 3' -56 NC_001650.1 + 16896 0.77 0.389562
Target:  5'- cCAAUggGggC-CCGGGGGAGGGCGGCa -3'
miRNA:   3'- -GUUGugCuaGcGGUCUCCUCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 18005 0.68 0.853666
Target:  5'- gGGgGCGcUCuGCCAguauggggagagacuGAGGAGGGguGCa -3'
miRNA:   3'- gUUgUGCuAG-CGGU---------------CUCCUCCCguCG- -5'
3686 3' -56 NC_001650.1 + 21370 0.73 0.565069
Target:  5'- -----aGAggGCCAGAGGGGGGCGcGCg -3'
miRNA:   3'- guugugCUagCGGUCUCCUCCCGU-CG- -5'
3686 3' -56 NC_001650.1 + 21500 0.66 0.912402
Target:  5'- uGACuAUGGgugCGCCGGgaccGGGGGGGCuacuGCu -3'
miRNA:   3'- gUUG-UGCUa--GCGGUC----UCCUCCCGu---CG- -5'
3686 3' -56 NC_001650.1 + 21782 0.67 0.906417
Target:  5'- gGugGgGGaCGCCGG-GGAGGGCgccGGCc -3'
miRNA:   3'- gUugUgCUaGCGGUCuCCUCCCG---UCG- -5'
3686 3' -56 NC_001650.1 + 23755 0.68 0.841036
Target:  5'- -cGCGCGGggggcggagaccCGCCcGAGGGGGGC-GCu -3'
miRNA:   3'- guUGUGCUa-----------GCGGuCUCCUCCCGuCG- -5'
3686 3' -56 NC_001650.1 + 24048 0.7 0.763914
Target:  5'- gGGCACGA-CGUCGG-GGAcgggggccuguGGGCGGCc -3'
miRNA:   3'- gUUGUGCUaGCGGUCuCCU-----------CCCGUCG- -5'
3686 3' -56 NC_001650.1 + 25800 0.71 0.725581
Target:  5'- uGACACcagCGuCCAGAGGuggacccugggaGGGGCGGCc -3'
miRNA:   3'- gUUGUGcuaGC-GGUCUCC------------UCCCGUCG- -5'
3686 3' -56 NC_001650.1 + 28777 0.7 0.75448
Target:  5'- ---gACGGUgccgcCGCCGGAGG-GGGCGGg -3'
miRNA:   3'- guugUGCUA-----GCGGUCUCCuCCCGUCg -5'
3686 3' -56 NC_001650.1 + 29045 0.78 0.333677
Target:  5'- gGGCAUGAUCGCCcuccacuaccacgGGAGGAGGGCccAGg -3'
miRNA:   3'- gUUGUGCUAGCGG-------------UCUCCUCCCG--UCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.