Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
369 | 3' | -53 | AC_000011.1 | + | 22517 | 0.7 | 0.511822 |
Target: 5'- gCGCUgAAGGAG-AACCCCGaCcGGGCc -3' miRNA: 3'- gGCGGgUUCUUCuUUGGGGC-GuUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 26481 | 0.69 | 0.529465 |
Target: 5'- gCCGCCCAGGAcuacuccaCCCGCAuGAa -3' miRNA: 3'- -GGCGGGUUCUucuuug--GGGCGUuCUg -5' |
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369 | 3' | -53 | AC_000011.1 | + | 20088 | 0.69 | 0.532799 |
Target: 5'- cCCGUCCGugcgcaggucguuGccGAGGGAGCUCUGCAGGAUc -3' miRNA: 3'- -GGCGGGU-------------U--CUUCUUUGGGGCGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 4177 | 0.69 | 0.533912 |
Target: 5'- aCC-CCCGAGcacGAGGCCCUGCAauGGAg -3' miRNA: 3'- -GGcGGGUUCuu-CUUUGGGGCGU--UCUg -5' |
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369 | 3' | -53 | AC_000011.1 | + | 22022 | 0.69 | 0.533912 |
Target: 5'- gCGCCCGAccugcuGGgcGCCCUGCAAcuGACg -3' miRNA: 3'- gGCGGGUUcu----UCuuUGGGGCGUU--CUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 9860 | 0.69 | 0.533912 |
Target: 5'- gUGCCCGuGGAGcgGCUCaUGCAGGACu -3' miRNA: 3'- gGCGGGUuCUUCuuUGGG-GCGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 24591 | 0.69 | 0.543963 |
Target: 5'- aCCGCCUggGGcAGAAcgugcugcacaccACCCUGCGcggggAGGCc -3' miRNA: 3'- -GGCGGGuuCU-UCUU-------------UGGGGCGU-----UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 9421 | 0.69 | 0.572186 |
Target: 5'- gCCGCCgCGcaucuccagguggccGGggGGGuCCCCGUuGGGCa -3' miRNA: 3'- -GGCGG-GU---------------UCuuCUUuGGGGCGuUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 34390 | 0.68 | 0.579015 |
Target: 5'- aCCauauCCCAGGGcacgGGGAACuCuuGCAGGACa -3' miRNA: 3'- -GGc---GGGUUCU----UCUUUG-GggCGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 16154 | 0.68 | 0.590433 |
Target: 5'- aCgGCCCugcgguggugaAGGAGGAAagaaaGCCCCGCAAa-- -3' miRNA: 3'- -GgCGGG-----------UUCUUCUU-----UGGGGCGUUcug -5' |
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369 | 3' | -53 | AC_000011.1 | + | 5701 | 0.68 | 0.590433 |
Target: 5'- cCCGCCCAcuccgAGAcGAAAgCCCGgGuccAGGCc -3' miRNA: 3'- -GGCGGGU-----UCUuCUUUgGGGCgU---UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 25968 | 0.68 | 0.600743 |
Target: 5'- gCGCCgGGuGAAGGAGauguugcCCCCGCAGGcCu -3' miRNA: 3'- gGCGGgUU-CUUCUUU-------GGGGCGUUCuG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 17792 | 0.68 | 0.60189 |
Target: 5'- gCCGCCCGccGGcuccguGGAGAUgCCGCAGGu- -3' miRNA: 3'- -GGCGGGU--UCu-----UCUUUGgGGCGUUCug -5' |
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369 | 3' | -53 | AC_000011.1 | + | 21595 | 0.68 | 0.624878 |
Target: 5'- gUCGcCCCAGGuGGAAcccACCCUGCGccgcaaccaggAGGCg -3' miRNA: 3'- -GGC-GGGUUCuUCUU---UGGGGCGU-----------UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 8338 | 0.68 | 0.624878 |
Target: 5'- gCGCCCuGGAA-AAACuCCUGCAAGuCa -3' miRNA: 3'- gGCGGGuUCUUcUUUG-GGGCGUUCuG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 4091 | 0.67 | 0.636388 |
Target: 5'- cCCGuCCCGGGGguGGAgguAGCUCCauuGCAGGGCc -3' miRNA: 3'- -GGC-GGGUUCU--UCU---UUGGGG---CGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 9496 | 0.67 | 0.647893 |
Target: 5'- uUGCCCcgu-AGGGACUCCGCGcaaGGACc -3' miRNA: 3'- gGCGGGuucuUCUUUGGGGCGU---UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 25621 | 0.67 | 0.647893 |
Target: 5'- -gGCagAGGAGGAcAgCCUGCAAGACa -3' miRNA: 3'- ggCGggUUCUUCUuUgGGGCGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 6025 | 0.67 | 0.647894 |
Target: 5'- cCCGCCUucGAGAGGGAauaccuACCCCaacagcuggcGCuccuGGACa -3' miRNA: 3'- -GGCGGG--UUCUUCUU------UGGGG----------CGu---UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 7176 | 0.67 | 0.649044 |
Target: 5'- gCCGCCCAGGccuacgcccuCCCCGUggagaAGGGCu -3' miRNA: 3'- -GGCGGGUUCuucuuu----GGGGCG-----UUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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