Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
369 | 3' | -53 | AC_000011.1 | + | 9421 | 0.69 | 0.572186 |
Target: 5'- gCCGCCgCGcaucuccagguggccGGggGGGuCCCCGUuGGGCa -3' miRNA: 3'- -GGCGG-GU---------------UCuuCUUuGGGGCGuUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 24591 | 0.69 | 0.543963 |
Target: 5'- aCCGCCUggGGcAGAAcgugcugcacaccACCCUGCGcggggAGGCc -3' miRNA: 3'- -GGCGGGuuCU-UCUU-------------UGGGGCGU-----UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 4177 | 0.69 | 0.533912 |
Target: 5'- aCC-CCCGAGcacGAGGCCCUGCAauGGAg -3' miRNA: 3'- -GGcGGGUUCuu-CUUUGGGGCGU--UCUg -5' |
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369 | 3' | -53 | AC_000011.1 | + | 22022 | 0.69 | 0.533912 |
Target: 5'- gCGCCCGAccugcuGGgcGCCCUGCAAcuGACg -3' miRNA: 3'- gGCGGGUUcu----UCuuUGGGGCGUU--CUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 9860 | 0.69 | 0.533912 |
Target: 5'- gUGCCCGuGGAGcgGCUCaUGCAGGACu -3' miRNA: 3'- gGCGGGUuCUUCuuUGGG-GCGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 20088 | 0.69 | 0.532799 |
Target: 5'- cCCGUCCGugcgcaggucguuGccGAGGGAGCUCUGCAGGAUc -3' miRNA: 3'- -GGCGGGU-------------U--CUUCUUUGGGGCGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 26481 | 0.69 | 0.529465 |
Target: 5'- gCCGCCCAGGAcuacuccaCCCGCAuGAa -3' miRNA: 3'- -GGCGGGUUCUucuuug--GGGCGUuCUg -5' |
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369 | 3' | -53 | AC_000011.1 | + | 22517 | 0.7 | 0.511822 |
Target: 5'- gCGCUgAAGGAG-AACCCCGaCcGGGCc -3' miRNA: 3'- gGCGGgUUCUUCuUUGGGGC-GuUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 22226 | 0.7 | 0.500918 |
Target: 5'- gUGCCCAccaugGGAAGGcagaCCUGCAAGAUg -3' miRNA: 3'- gGCGGGU-----UCUUCUuug-GGGCGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 8421 | 0.7 | 0.490118 |
Target: 5'- aC-CCCAGGGGcacGGGACCCUGCAAGcCa -3' miRNA: 3'- gGcGGGUUCUU---CUUUGGGGCGUUCuG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 20278 | 0.7 | 0.479428 |
Target: 5'- aCGCgucucaagaCCAAGGAGAcGCCCuCGCuGGGCu -3' miRNA: 3'- gGCG---------GGUUCUUCUuUGGG-GCGuUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 33364 | 0.71 | 0.437873 |
Target: 5'- aUCGCCCAAGAAuGAAcacuguaucccACCCUGCAu--- -3' miRNA: 3'- -GGCGGGUUCUU-CUU-----------UGGGGCGUucug -5' |
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369 | 3' | -53 | AC_000011.1 | + | 16468 | 0.71 | 0.4081 |
Target: 5'- uCCGCaCCGaaGGAAGAGGCgguguccauCCCGCuGGACc -3' miRNA: 3'- -GGCG-GGU--UCUUCUUUG---------GGGCGuUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 4779 | 0.72 | 0.391801 |
Target: 5'- cCCGCCCcGGAAaccguguucuuuaucGCCCCGCAgguGGACa -3' miRNA: 3'- -GGCGGGuUCUUcuu------------UGGGGCGU---UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 4947 | 0.72 | 0.379626 |
Target: 5'- cCC-CCCAGGGauAGGAGCUCCuggaGCGAGGCg -3' miRNA: 3'- -GGcGGGUUCU--UCUUUGGGG----CGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 27202 | 0.72 | 0.361397 |
Target: 5'- gCUGCCCGAGGAGc-ACCCU-CAGGGCc -3' miRNA: 3'- -GGCGGGUUCUUCuuUGGGGcGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 17869 | 0.73 | 0.352513 |
Target: 5'- cCCGCCCcgaugcGGAGGAGACgCUGCu-GACg -3' miRNA: 3'- -GGCGGGu-----UCUUCUUUGgGGCGuuCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 25751 | 0.73 | 0.335214 |
Target: 5'- uCCGCuCCGGGucGGggUCCCGCucGACc -3' miRNA: 3'- -GGCG-GGUUCuuCUuuGGGGCGuuCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 21116 | 0.73 | 0.326801 |
Target: 5'- aCCGgCCGAGAAGggGgUgCGCAgguAGACg -3' miRNA: 3'- -GGCgGGUUCUUCuuUgGgGCGU---UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 19928 | 0.74 | 0.302505 |
Target: 5'- uUGCCCAGGAgcauGGAgcgguagcgcAGCCCCGCAuuGCg -3' miRNA: 3'- gGCGGGUUCU----UCU----------UUGGGGCGUucUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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