miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
369 3' -53 AC_000011.1 + 23147 1.11 0.000758
Target:  5'- gCCGCCCAAGAAGAAACCCCGCAAGACc -3'
miRNA:   3'- -GGCGGGUUCUUCUUUGGGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 3593 0.84 0.06242
Target:  5'- cCCGCCCAgagGGGAGAcGCCCCGUcAGAUa -3'
miRNA:   3'- -GGCGGGU---UCUUCUuUGGGGCGuUCUG- -5'
369 3' -53 AC_000011.1 + 22320 0.77 0.185456
Target:  5'- uCC-CUCGGuGAAGaAGACCCCGCAGGACu -3'
miRNA:   3'- -GGcGGGUU-CUUC-UUUGGGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 34227 0.75 0.251286
Target:  5'- cCCGCCCGccaugcagcGAAGAGACCCCGgGucccGGCa -3'
miRNA:   3'- -GGCGGGUu--------CUUCUUUGGGGCgUu---CUG- -5'
369 3' -53 AC_000011.1 + 11107 0.75 0.256758
Target:  5'- -aGCCCGAGGAGAugcgcgcGGCCCgguuccaCGCGGGGCg -3'
miRNA:   3'- ggCGGGUUCUUCU-------UUGGG-------GCGUUCUG- -5'
369 3' -53 AC_000011.1 + 8454 0.74 0.272309
Target:  5'- gCCGCCCAAGAAGAAA---CGgGGGACg -3'
miRNA:   3'- -GGCGGGUUCUUCUUUgggGCgUUCUG- -5'
369 3' -53 AC_000011.1 + 7294 0.74 0.287094
Target:  5'- aUCGUUgAAGAGGAucuuGCCCgCGCGGGGCa -3'
miRNA:   3'- -GGCGGgUUCUUCUu---UGGG-GCGUUCUG- -5'
369 3' -53 AC_000011.1 + 21228 0.74 0.294721
Target:  5'- gUGCCCAGGAAGuAGGgCCCGCAgcccaggucgcGGAUg -3'
miRNA:   3'- gGCGGGUUCUUC-UUUgGGGCGU-----------UCUG- -5'
369 3' -53 AC_000011.1 + 19928 0.74 0.302505
Target:  5'- uUGCCCAGGAgcauGGAgcgguagcgcAGCCCCGCAuuGCg -3'
miRNA:   3'- gGCGGGUUCU----UCU----------UUGGGGCGUucUG- -5'
369 3' -53 AC_000011.1 + 21116 0.73 0.326801
Target:  5'- aCCGgCCGAGAAGggGgUgCGCAgguAGACg -3'
miRNA:   3'- -GGCgGGUUCUUCuuUgGgGCGU---UCUG- -5'
369 3' -53 AC_000011.1 + 25751 0.73 0.335214
Target:  5'- uCCGCuCCGGGucGGggUCCCGCucGACc -3'
miRNA:   3'- -GGCG-GGUUCuuCUuuGGGGCGuuCUG- -5'
369 3' -53 AC_000011.1 + 17869 0.73 0.352513
Target:  5'- cCCGCCCcgaugcGGAGGAGACgCUGCu-GACg -3'
miRNA:   3'- -GGCGGGu-----UCUUCUUUGgGGCGuuCUG- -5'
369 3' -53 AC_000011.1 + 27202 0.72 0.361397
Target:  5'- gCUGCCCGAGGAGc-ACCCU-CAGGGCc -3'
miRNA:   3'- -GGCGGGUUCUUCuuUGGGGcGUUCUG- -5'
369 3' -53 AC_000011.1 + 4947 0.72 0.379626
Target:  5'- cCC-CCCAGGGauAGGAGCUCCuggaGCGAGGCg -3'
miRNA:   3'- -GGcGGGUUCU--UCUUUGGGG----CGUUCUG- -5'
369 3' -53 AC_000011.1 + 4779 0.72 0.391801
Target:  5'- cCCGCCCcGGAAaccguguucuuuaucGCCCCGCAgguGGACa -3'
miRNA:   3'- -GGCGGGuUCUUcuu------------UGGGGCGU---UCUG- -5'
369 3' -53 AC_000011.1 + 16468 0.71 0.4081
Target:  5'- uCCGCaCCGaaGGAAGAGGCgguguccauCCCGCuGGACc -3'
miRNA:   3'- -GGCG-GGU--UCUUCUUUG---------GGGCGuUCUG- -5'
369 3' -53 AC_000011.1 + 33364 0.71 0.437873
Target:  5'- aUCGCCCAAGAAuGAAcacuguaucccACCCUGCAu--- -3'
miRNA:   3'- -GGCGGGUUCUU-CUU-----------UGGGGCGUucug -5'
369 3' -53 AC_000011.1 + 20278 0.7 0.479428
Target:  5'- aCGCgucucaagaCCAAGGAGAcGCCCuCGCuGGGCu -3'
miRNA:   3'- gGCG---------GGUUCUUCUuUGGG-GCGuUCUG- -5'
369 3' -53 AC_000011.1 + 8421 0.7 0.490118
Target:  5'- aC-CCCAGGGGcacGGGACCCUGCAAGcCa -3'
miRNA:   3'- gGcGGGUUCUU---CUUUGGGGCGUUCuG- -5'
369 3' -53 AC_000011.1 + 22226 0.7 0.500918
Target:  5'- gUGCCCAccaugGGAAGGcagaCCUGCAAGAUg -3'
miRNA:   3'- gGCGGGU-----UCUUCUuug-GGGCGUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.