Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
369 | 3' | -53 | AC_000011.1 | + | 1723 | 0.66 | 0.727308 |
Target: 5'- aUCuCCaCAGGuAAGAGACUCCGUucGAGGCg -3' miRNA: 3'- -GGcGG-GUUC-UUCUUUGGGGCG--UUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 3593 | 0.84 | 0.06242 |
Target: 5'- cCCGCCCAgagGGGAGAcGCCCCGUcAGAUa -3' miRNA: 3'- -GGCGGGU---UCUUCUuUGGGGCGuUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 4091 | 0.67 | 0.636388 |
Target: 5'- cCCGuCCCGGGGguGGAgguAGCUCCauuGCAGGGCc -3' miRNA: 3'- -GGC-GGGUUCU--UCU---UUGGGG---CGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 4177 | 0.69 | 0.533912 |
Target: 5'- aCC-CCCGAGcacGAGGCCCUGCAauGGAg -3' miRNA: 3'- -GGcGGGUUCuu-CUUUGGGGCGU--UCUg -5' |
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369 | 3' | -53 | AC_000011.1 | + | 4779 | 0.72 | 0.391801 |
Target: 5'- cCCGCCCcGGAAaccguguucuuuaucGCCCCGCAgguGGACa -3' miRNA: 3'- -GGCGGGuUCUUcuu------------UGGGGCGU---UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 4947 | 0.72 | 0.379626 |
Target: 5'- cCC-CCCAGGGauAGGAGCUCCuggaGCGAGGCg -3' miRNA: 3'- -GGcGGGUUCU--UCUUUGGGG----CGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 5701 | 0.68 | 0.590433 |
Target: 5'- cCCGCCCAcuccgAGAcGAAAgCCCGgGuccAGGCc -3' miRNA: 3'- -GGCGGGU-----UCUuCUUUgGGGCgU---UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 6025 | 0.67 | 0.647894 |
Target: 5'- cCCGCCUucGAGAGGGAauaccuACCCCaacagcuggcGCuccuGGACa -3' miRNA: 3'- -GGCGGG--UUCUUCUU------UGGGG----------CGu---UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 7176 | 0.67 | 0.649044 |
Target: 5'- gCCGCCCAGGccuacgcccuCCCCGUggagaAGGGCu -3' miRNA: 3'- -GGCGGGUUCuucuuu----GGGGCG-----UUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 7294 | 0.74 | 0.287094 |
Target: 5'- aUCGUUgAAGAGGAucuuGCCCgCGCGGGGCa -3' miRNA: 3'- -GGCGGgUUCUUCUu---UGGG-GCGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 8338 | 0.68 | 0.624878 |
Target: 5'- gCGCCCuGGAA-AAACuCCUGCAAGuCa -3' miRNA: 3'- gGCGGGuUCUUcUUUG-GGGCGUUCuG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 8421 | 0.7 | 0.490118 |
Target: 5'- aC-CCCAGGGGcacGGGACCCUGCAAGcCa -3' miRNA: 3'- gGcGGGUUCUU---CUUUGGGGCGUUCuG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 8454 | 0.74 | 0.272309 |
Target: 5'- gCCGCCCAAGAAGAAA---CGgGGGACg -3' miRNA: 3'- -GGCGGGUUCUUCUUUgggGCgUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 9421 | 0.69 | 0.572186 |
Target: 5'- gCCGCCgCGcaucuccagguggccGGggGGGuCCCCGUuGGGCa -3' miRNA: 3'- -GGCGG-GU---------------UCuuCUUuGGGGCGuUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 9496 | 0.67 | 0.647893 |
Target: 5'- uUGCCCcgu-AGGGACUCCGCGcaaGGACc -3' miRNA: 3'- gGCGGGuucuUCUUUGGGGCGU---UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 9860 | 0.69 | 0.533912 |
Target: 5'- gUGCCCGuGGAGcgGCUCaUGCAGGACu -3' miRNA: 3'- gGCGGGUuCUUCuuUGGG-GCGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 11027 | 0.67 | 0.682268 |
Target: 5'- cCCGCgCGugcAGAugaaaAGGGACgCUCGCGAGGCc -3' miRNA: 3'- -GGCGgGU---UCU-----UCUUUG-GGGCGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 11107 | 0.75 | 0.256758 |
Target: 5'- -aGCCCGAGGAGAugcgcgcGGCCCgguuccaCGCGGGGCg -3' miRNA: 3'- ggCGGGUUCUUCU-------UUGGG-------GCGUUCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 11626 | 0.67 | 0.669701 |
Target: 5'- aCG-CUAGGAAGAucuacaaGACCCCGUAcgugcccauAGACa -3' miRNA: 3'- gGCgGGUUCUUCU-------UUGGGGCGU---------UCUG- -5' |
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369 | 3' | -53 | AC_000011.1 | + | 14678 | 0.66 | 0.738341 |
Target: 5'- gCgGCUCucgguGAAGuccACCCCGCAgccGGGCa -3' miRNA: 3'- -GgCGGGuu---CUUCuu-UGGGGCGU---UCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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