miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
369 3' -53 AC_000011.1 + 9496 0.67 0.647893
Target:  5'- uUGCCCcgu-AGGGACUCCGCGcaaGGACc -3'
miRNA:   3'- gGCGGGuucuUCUUUGGGGCGU---UCUG- -5'
369 3' -53 AC_000011.1 + 24591 0.69 0.543963
Target:  5'- aCCGCCUggGGcAGAAcgugcugcacaccACCCUGCGcggggAGGCc -3'
miRNA:   3'- -GGCGGGuuCU-UCUU-------------UGGGGCGU-----UCUG- -5'
369 3' -53 AC_000011.1 + 9421 0.69 0.572186
Target:  5'- gCCGCCgCGcaucuccagguggccGGggGGGuCCCCGUuGGGCa -3'
miRNA:   3'- -GGCGG-GU---------------UCuuCUUuGGGGCGuUCUG- -5'
369 3' -53 AC_000011.1 + 34390 0.68 0.579015
Target:  5'- aCCauauCCCAGGGcacgGGGAACuCuuGCAGGACa -3'
miRNA:   3'- -GGc---GGGUUCU----UCUUUG-GggCGUUCUG- -5'
369 3' -53 AC_000011.1 + 16154 0.68 0.590433
Target:  5'- aCgGCCCugcgguggugaAGGAGGAAagaaaGCCCCGCAAa-- -3'
miRNA:   3'- -GgCGGG-----------UUCUUCUU-----UGGGGCGUUcug -5'
369 3' -53 AC_000011.1 + 5701 0.68 0.590433
Target:  5'- cCCGCCCAcuccgAGAcGAAAgCCCGgGuccAGGCc -3'
miRNA:   3'- -GGCGGGU-----UCUuCUUUgGGGCgU---UCUG- -5'
369 3' -53 AC_000011.1 + 17792 0.68 0.60189
Target:  5'- gCCGCCCGccGGcuccguGGAGAUgCCGCAGGu- -3'
miRNA:   3'- -GGCGGGU--UCu-----UCUUUGgGGCGUUCug -5'
369 3' -53 AC_000011.1 + 21595 0.68 0.624878
Target:  5'- gUCGcCCCAGGuGGAAcccACCCUGCGccgcaaccaggAGGCg -3'
miRNA:   3'- -GGC-GGGUUCuUCUU---UGGGGCGU-----------UCUG- -5'
369 3' -53 AC_000011.1 + 4091 0.67 0.636388
Target:  5'- cCCGuCCCGGGGguGGAgguAGCUCCauuGCAGGGCc -3'
miRNA:   3'- -GGC-GGGUUCU--UCU---UUGGGG---CGUUCUG- -5'
369 3' -53 AC_000011.1 + 26481 0.69 0.529465
Target:  5'- gCCGCCCAGGAcuacuccaCCCGCAuGAa -3'
miRNA:   3'- -GGCGGGUUCUucuuug--GGGCGUuCUg -5'
369 3' -53 AC_000011.1 + 20278 0.7 0.479428
Target:  5'- aCGCgucucaagaCCAAGGAGAcGCCCuCGCuGGGCu -3'
miRNA:   3'- gGCG---------GGUUCUUCUuUGGG-GCGuUCUG- -5'
369 3' -53 AC_000011.1 + 33364 0.71 0.437873
Target:  5'- aUCGCCCAAGAAuGAAcacuguaucccACCCUGCAu--- -3'
miRNA:   3'- -GGCGGGUUCUU-CUU-----------UGGGGCGUucug -5'
369 3' -53 AC_000011.1 + 34227 0.75 0.251286
Target:  5'- cCCGCCCGccaugcagcGAAGAGACCCCGgGucccGGCa -3'
miRNA:   3'- -GGCGGGUu--------CUUCUUUGGGGCgUu---CUG- -5'
369 3' -53 AC_000011.1 + 11107 0.75 0.256758
Target:  5'- -aGCCCGAGGAGAugcgcgcGGCCCgguuccaCGCGGGGCg -3'
miRNA:   3'- ggCGGGUUCUUCU-------UUGGG-------GCGUUCUG- -5'
369 3' -53 AC_000011.1 + 7294 0.74 0.287094
Target:  5'- aUCGUUgAAGAGGAucuuGCCCgCGCGGGGCa -3'
miRNA:   3'- -GGCGGgUUCUUCUu---UGGG-GCGUUCUG- -5'
369 3' -53 AC_000011.1 + 25751 0.73 0.335214
Target:  5'- uCCGCuCCGGGucGGggUCCCGCucGACc -3'
miRNA:   3'- -GGCG-GGUUCuuCUuuGGGGCGuuCUG- -5'
369 3' -53 AC_000011.1 + 17869 0.73 0.352513
Target:  5'- cCCGCCCcgaugcGGAGGAGACgCUGCu-GACg -3'
miRNA:   3'- -GGCGGGu-----UCUUCUUUGgGGCGuuCUG- -5'
369 3' -53 AC_000011.1 + 27202 0.72 0.361397
Target:  5'- gCUGCCCGAGGAGc-ACCCU-CAGGGCc -3'
miRNA:   3'- -GGCGGGUUCUUCuuUGGGGcGUUCUG- -5'
369 3' -53 AC_000011.1 + 4947 0.72 0.379626
Target:  5'- cCC-CCCAGGGauAGGAGCUCCuggaGCGAGGCg -3'
miRNA:   3'- -GGcGGGUUCU--UCUUUGGGG----CGUUCUG- -5'
369 3' -53 AC_000011.1 + 16468 0.71 0.4081
Target:  5'- uCCGCaCCGaaGGAAGAGGCgguguccauCCCGCuGGACc -3'
miRNA:   3'- -GGCG-GGU--UCUUCUUUG---------GGGCGuUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.