miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
369 3' -53 AC_000011.1 + 23147 1.11 0.000758
Target:  5'- gCCGCCCAAGAAGAAACCCCGCAAGACc -3'
miRNA:   3'- -GGCGGGUUCUUCUUUGGGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 7176 0.67 0.649044
Target:  5'- gCCGCCCAGGccuacgcccuCCCCGUggagaAGGGCu -3'
miRNA:   3'- -GGCGGGUUCuucuuu----GGGGCG-----UUCUG- -5'
369 3' -53 AC_000011.1 + 14678 0.66 0.738341
Target:  5'- gCgGCUCucgguGAAGuccACCCCGCAgccGGGCa -3'
miRNA:   3'- -GgCGGGuu---CUUCuu-UGGGGCGU---UCUG- -5'
369 3' -53 AC_000011.1 + 16774 0.66 0.749256
Target:  5'- aCGCCCAGGcccGggGCCaCCuGCuugauGGGCc -3'
miRNA:   3'- gGCGGGUUCuu-CuuUGG-GG-CGu----UCUG- -5'
369 3' -53 AC_000011.1 + 19928 0.74 0.302505
Target:  5'- uUGCCCAGGAgcauGGAgcgguagcgcAGCCCCGCAuuGCg -3'
miRNA:   3'- gGCGGGUUCU----UCU----------UUGGGGCGUucUG- -5'
369 3' -53 AC_000011.1 + 21116 0.73 0.326801
Target:  5'- aCCGgCCGAGAAGggGgUgCGCAgguAGACg -3'
miRNA:   3'- -GGCgGGUUCUUCuuUgGgGCGU---UCUG- -5'
369 3' -53 AC_000011.1 + 8421 0.7 0.490118
Target:  5'- aC-CCCAGGGGcacGGGACCCUGCAAGcCa -3'
miRNA:   3'- gGcGGGUUCUU---CUUUGGGGCGUUCuG- -5'
369 3' -53 AC_000011.1 + 22226 0.7 0.500918
Target:  5'- gUGCCCAccaugGGAAGGcagaCCUGCAAGAUg -3'
miRNA:   3'- gGCGGGU-----UCUUCUuug-GGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 22022 0.69 0.533912
Target:  5'- gCGCCCGAccugcuGGgcGCCCUGCAAcuGACg -3'
miRNA:   3'- gGCGGGUUcu----UCuuUGGGGCGUU--CUG- -5'
369 3' -53 AC_000011.1 + 6025 0.67 0.647894
Target:  5'- cCCGCCUucGAGAGGGAauaccuACCCCaacagcuggcGCuccuGGACa -3'
miRNA:   3'- -GGCGGG--UUCUUCUU------UGGGG----------CGu---UCUG- -5'
369 3' -53 AC_000011.1 + 4177 0.69 0.533912
Target:  5'- aCC-CCCGAGcacGAGGCCCUGCAauGGAg -3'
miRNA:   3'- -GGcGGGUUCuu-CUUUGGGGCGU--UCUg -5'
369 3' -53 AC_000011.1 + 20088 0.69 0.532799
Target:  5'- cCCGUCCGugcgcaggucguuGccGAGGGAGCUCUGCAGGAUc -3'
miRNA:   3'- -GGCGGGU-------------U--CUUCUUUGGGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 3593 0.84 0.06242
Target:  5'- cCCGCCCAgagGGGAGAcGCCCCGUcAGAUa -3'
miRNA:   3'- -GGCGGGU---UCUUCUuUGGGGCGuUCUG- -5'
369 3' -53 AC_000011.1 + 25968 0.68 0.600743
Target:  5'- gCGCCgGGuGAAGGAGauguugcCCCCGCAGGcCu -3'
miRNA:   3'- gGCGGgUU-CUUCUUU-------GGGGCGUUCuG- -5'
369 3' -53 AC_000011.1 + 8454 0.74 0.272309
Target:  5'- gCCGCCCAAGAAGAAA---CGgGGGACg -3'
miRNA:   3'- -GGCGGGUUCUUCUUUgggGCgUUCUG- -5'
369 3' -53 AC_000011.1 + 22517 0.7 0.511822
Target:  5'- gCGCUgAAGGAG-AACCCCGaCcGGGCc -3'
miRNA:   3'- gGCGGgUUCUUCuUUGGGGC-GuUCUG- -5'
369 3' -53 AC_000011.1 + 8338 0.68 0.624878
Target:  5'- gCGCCCuGGAA-AAACuCCUGCAAGuCa -3'
miRNA:   3'- gGCGGGuUCUUcUUUG-GGGCGUUCuG- -5'
369 3' -53 AC_000011.1 + 1723 0.66 0.727308
Target:  5'- aUCuCCaCAGGuAAGAGACUCCGUucGAGGCg -3'
miRNA:   3'- -GGcGG-GUUC-UUCUUUGGGGCG--UUCUG- -5'
369 3' -53 AC_000011.1 + 21228 0.74 0.294721
Target:  5'- gUGCCCAGGAAGuAGGgCCCGCAgcccaggucgcGGAUg -3'
miRNA:   3'- gGCGGGUUCUUC-UUUgGGGCGU-----------UCUG- -5'
369 3' -53 AC_000011.1 + 4779 0.72 0.391801
Target:  5'- cCCGCCCcGGAAaccguguucuuuaucGCCCCGCAgguGGACa -3'
miRNA:   3'- -GGCGGGuUCUUcuu------------UGGGGCGU---UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.