miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
369 3' -53 AC_000011.1 + 34390 0.68 0.579015
Target:  5'- aCCauauCCCAGGGcacgGGGAACuCuuGCAGGACa -3'
miRNA:   3'- -GGc---GGGUUCU----UCUUUG-GggCGUUCUG- -5'
369 3' -53 AC_000011.1 + 34227 0.75 0.251286
Target:  5'- cCCGCCCGccaugcagcGAAGAGACCCCGgGucccGGCa -3'
miRNA:   3'- -GGCGGGUu--------CUUCUUUGGGGCgUu---CUG- -5'
369 3' -53 AC_000011.1 + 33364 0.71 0.437873
Target:  5'- aUCGCCCAAGAAuGAAcacuguaucccACCCUGCAu--- -3'
miRNA:   3'- -GGCGGGUUCUU-CUU-----------UGGGGCGUucug -5'
369 3' -53 AC_000011.1 + 27202 0.72 0.361397
Target:  5'- gCUGCCCGAGGAGc-ACCCU-CAGGGCc -3'
miRNA:   3'- -GGCGGGUUCUUCuuUGGGGcGUUCUG- -5'
369 3' -53 AC_000011.1 + 26481 0.69 0.529465
Target:  5'- gCCGCCCAGGAcuacuccaCCCGCAuGAa -3'
miRNA:   3'- -GGCGGGUUCUucuuug--GGGCGUuCUg -5'
369 3' -53 AC_000011.1 + 25968 0.68 0.600743
Target:  5'- gCGCCgGGuGAAGGAGauguugcCCCCGCAGGcCu -3'
miRNA:   3'- gGCGGgUU-CUUCUUU-------GGGGCGUUCuG- -5'
369 3' -53 AC_000011.1 + 25751 0.73 0.335214
Target:  5'- uCCGCuCCGGGucGGggUCCCGCucGACc -3'
miRNA:   3'- -GGCG-GGUUCuuCUuuGGGGCGuuCUG- -5'
369 3' -53 AC_000011.1 + 25621 0.67 0.647893
Target:  5'- -gGCagAGGAGGAcAgCCUGCAAGACa -3'
miRNA:   3'- ggCGggUUCUUCUuUgGGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 24591 0.69 0.543963
Target:  5'- aCCGCCUggGGcAGAAcgugcugcacaccACCCUGCGcggggAGGCc -3'
miRNA:   3'- -GGCGGGuuCU-UCUU-------------UGGGGCGU-----UCUG- -5'
369 3' -53 AC_000011.1 + 24452 0.66 0.727308
Target:  5'- uUCGCCgAcGcGGAGACCCugCGCAAGGu -3'
miRNA:   3'- -GGCGGgUuCuUCUUUGGG--GCGUUCUg -5'
369 3' -53 AC_000011.1 + 23147 1.11 0.000758
Target:  5'- gCCGCCCAAGAAGAAACCCCGCAAGACc -3'
miRNA:   3'- -GGCGGGUUCUUCUUUGGGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 23048 0.66 0.716171
Target:  5'- gCUGUCCuGGcuGAcgUCCUGCAGGACc -3'
miRNA:   3'- -GGCGGGuUCuuCUuuGGGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 22630 0.66 0.727308
Target:  5'- gCGaUCUggGAAugcgcgugcacGAAGCCCUGCAGGAa -3'
miRNA:   3'- gGC-GGGuuCUU-----------CUUUGGGGCGUUCUg -5'
369 3' -53 AC_000011.1 + 22517 0.7 0.511822
Target:  5'- gCGCUgAAGGAG-AACCCCGaCcGGGCc -3'
miRNA:   3'- gGCGGgUUCUUCuUUGGGGC-GuUCUG- -5'
369 3' -53 AC_000011.1 + 22320 0.77 0.185456
Target:  5'- uCC-CUCGGuGAAGaAGACCCCGCAGGACu -3'
miRNA:   3'- -GGcGGGUU-CUUC-UUUGGGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 22226 0.7 0.500918
Target:  5'- gUGCCCAccaugGGAAGGcagaCCUGCAAGAUg -3'
miRNA:   3'- gGCGGGU-----UCUUCUuug-GGGCGUUCUG- -5'
369 3' -53 AC_000011.1 + 22022 0.69 0.533912
Target:  5'- gCGCCCGAccugcuGGgcGCCCUGCAAcuGACg -3'
miRNA:   3'- gGCGGGUUcu----UCuuUGGGGCGUU--CUG- -5'
369 3' -53 AC_000011.1 + 21595 0.68 0.624878
Target:  5'- gUCGcCCCAGGuGGAAcccACCCUGCGccgcaaccaggAGGCg -3'
miRNA:   3'- -GGC-GGGUUCuUCUU---UGGGGCGU-----------UCUG- -5'
369 3' -53 AC_000011.1 + 21228 0.74 0.294721
Target:  5'- gUGCCCAGGAAGuAGGgCCCGCAgcccaggucgcGGAUg -3'
miRNA:   3'- gGCGGGUUCUUC-UUUgGGGCGU-----------UCUG- -5'
369 3' -53 AC_000011.1 + 21116 0.73 0.326801
Target:  5'- aCCGgCCGAGAAGggGgUgCGCAgguAGACg -3'
miRNA:   3'- -GGCgGGUUCUUCuuUgGgGCGU---UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.