miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3703 3' -53.2 NC_001650.1 + 35631 0.66 0.985222
Target:  5'- aCUGCgucgAGGCGCGGgagguguaccgGGUgUUCGCg- -3'
miRNA:   3'- gGACGa---UCUGUGCCa----------CCAgAAGUGgu -5'
3703 3' -53.2 NC_001650.1 + 106217 0.66 0.985222
Target:  5'- cUCUGC-GGGCACcaggauaugccaGGUGGUCUUCGu-- -3'
miRNA:   3'- -GGACGaUCUGUG------------CCACCAGAAGUggu -5'
3703 3' -53.2 NC_001650.1 + 131817 0.66 0.983405
Target:  5'- uCCUGUUcAGGCcgggGCGGUGGcCggcCGCCGa -3'
miRNA:   3'- -GGACGA-UCUG----UGCCACCaGaa-GUGGU- -5'
3703 3' -53.2 NC_001650.1 + 101352 0.66 0.980151
Target:  5'- cCCUGUcgggGGGCaggcgcgcuuucaugACGGUGGUCcaggacauaUUCACCu -3'
miRNA:   3'- -GGACGa---UCUG---------------UGCCACCAG---------AAGUGGu -5'
3703 3' -53.2 NC_001650.1 + 21219 0.66 0.979268
Target:  5'- cCCUGcCUAGugACuGcGGUCUUUuCCAg -3'
miRNA:   3'- -GGAC-GAUCugUGcCaCCAGAAGuGGU- -5'
3703 3' -53.2 NC_001650.1 + 72748 0.66 0.979268
Target:  5'- gCUGCUGGugAaCGGguucgcGGcCUUUGCCAu -3'
miRNA:   3'- gGACGAUCugU-GCCa-----CCaGAAGUGGU- -5'
3703 3' -53.2 NC_001650.1 + 97860 0.66 0.976934
Target:  5'- uCCUcUUGGGguagGgGGUGGUCUUCACCu -3'
miRNA:   3'- -GGAcGAUCUg---UgCCACCAGAAGUGGu -5'
3703 3' -53.2 NC_001650.1 + 107791 0.66 0.976934
Target:  5'- aCC--CUGGugGCGGUGGUCauggcgCACUAc -3'
miRNA:   3'- -GGacGAUCugUGCCACCAGaa----GUGGU- -5'
3703 3' -53.2 NC_001650.1 + 132321 0.66 0.976934
Target:  5'- aCUGCacGGGCGCGGUGGacccCUUCAa-- -3'
miRNA:   3'- gGACGa-UCUGUGCCACCa---GAAGUggu -5'
3703 3' -53.2 NC_001650.1 + 77120 0.67 0.973884
Target:  5'- -aUGUUGGuCugGGUGGUCgcggcggccccgUCGCCc -3'
miRNA:   3'- ggACGAUCuGugCCACCAGa-----------AGUGGu -5'
3703 3' -53.2 NC_001650.1 + 19029 0.67 0.96565
Target:  5'- gCUGUagcagcGGCACGGgGGUCUUUACUg -3'
miRNA:   3'- gGACGau----CUGUGCCaCCAGAAGUGGu -5'
3703 3' -53.2 NC_001650.1 + 170792 0.68 0.954966
Target:  5'- cCCUGCcAGGCAUGG-GGUUcUCAUUg -3'
miRNA:   3'- -GGACGaUCUGUGCCaCCAGaAGUGGu -5'
3703 3' -53.2 NC_001650.1 + 4085 0.68 0.954966
Target:  5'- cCCUGCcAGGCAUGG-GGUUcUCAUUg -3'
miRNA:   3'- -GGACGaUCUGUGCCaCCAGaAGUGGu -5'
3703 3' -53.2 NC_001650.1 + 28430 0.68 0.946709
Target:  5'- uCCUGCaUAGACAaGGgGGUCcUCACgGg -3'
miRNA:   3'- -GGACG-AUCUGUgCCaCCAGaAGUGgU- -5'
3703 3' -53.2 NC_001650.1 + 28971 0.68 0.945832
Target:  5'- cCCUGCUGGGCguACGGgacgcaccugggGGUCaggUACCGc -3'
miRNA:   3'- -GGACGAUCUG--UGCCa-----------CCAGaa-GUGGU- -5'
3703 3' -53.2 NC_001650.1 + 23243 0.68 0.94405
Target:  5'- uCCUGCUGGGgauccugaggcacccCACGGUGGg---CugCAa -3'
miRNA:   3'- -GGACGAUCU---------------GUGCCACCagaaGugGU- -5'
3703 3' -53.2 NC_001650.1 + 61600 0.69 0.932556
Target:  5'- uCCaGCUGGACGgGGUGGg--UCGCgAg -3'
miRNA:   3'- -GGaCGAUCUGUgCCACCagaAGUGgU- -5'
3703 3' -53.2 NC_001650.1 + 153754 0.69 0.932047
Target:  5'- aCUGCUuggcuuaugGGGCauggcccACGGUGGUCUUCAa-- -3'
miRNA:   3'- gGACGA---------UCUG-------UGCCACCAGAAGUggu -5'
3703 3' -53.2 NC_001650.1 + 165963 0.69 0.921922
Target:  5'- gCUGCUuucGGGCccGCGGUGGUCagUC-CCGc -3'
miRNA:   3'- gGACGA---UCUG--UGCCACCAGa-AGuGGU- -5'
3703 3' -53.2 NC_001650.1 + 73460 0.71 0.862419
Target:  5'- aCCUGCUGaACGCGGg---CUUCGCCu -3'
miRNA:   3'- -GGACGAUcUGUGCCaccaGAAGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.