miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3703 5' -55.6 NC_001650.1 + 161554 0.71 0.724375
Target:  5'- uGgaGGCCAGCcGCCGGCcg--CUGUCg -3'
miRNA:   3'- -CgaCCGGUUGaCGGUCGagaaGACGG- -5'
3703 5' -55.6 NC_001650.1 + 156952 0.67 0.894552
Target:  5'- --aGGCCGuaGCUcacgGCCAGCUCcgugGCCa -3'
miRNA:   3'- cgaCCGGU--UGA----CGGUCGAGaagaCGG- -5'
3703 5' -55.6 NC_001650.1 + 155356 0.76 0.401901
Target:  5'- uGCUGGUCuccccguGCaGCCGGCUgUUCUGCUc -3'
miRNA:   3'- -CGACCGGu------UGaCGGUCGAgAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 152278 0.66 0.935029
Target:  5'- cGgUGGCCGAgaGCagcgagaGGCUUUUCUcCCa -3'
miRNA:   3'- -CgACCGGUUgaCGg------UCGAGAAGAcGG- -5'
3703 5' -55.6 NC_001650.1 + 142713 0.66 0.935029
Target:  5'- uGUUGGgaa---GCCAGCUUUUUUGCCa -3'
miRNA:   3'- -CGACCgguugaCGGUCGAGAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 138725 0.73 0.6025
Target:  5'- aGCaUGGCCccuguCUGCCAGCauggCcccugUCUGCCa -3'
miRNA:   3'- -CG-ACCGGuu---GACGGUCGa---Ga----AGACGG- -5'
3703 5' -55.6 NC_001650.1 + 138669 0.73 0.6025
Target:  5'- aGCaUGGCCccuguCUGCCAGCauggCcccugUCUGCCa -3'
miRNA:   3'- -CG-ACCGGuu---GACGGUCGa---Ga----AGACGG- -5'
3703 5' -55.6 NC_001650.1 + 137550 0.69 0.80019
Target:  5'- cGCUGGCCcucAGCUGCauaaaCAGCUCgaggaaCUGgCa -3'
miRNA:   3'- -CGACCGG---UUGACG-----GUCGAGaa----GACgG- -5'
3703 5' -55.6 NC_001650.1 + 134927 0.73 0.592298
Target:  5'- cGCUGGCCAGCUccaggcccgggGgCAGCUCgUUgUGCa -3'
miRNA:   3'- -CGACCGGUUGA-----------CgGUCGAG-AAgACGg -5'
3703 5' -55.6 NC_001650.1 + 132700 0.69 0.80019
Target:  5'- uGCgUGGCCAgugGCUggGCCAGCUCggcgaucUUUGCa -3'
miRNA:   3'- -CG-ACCGGU---UGA--CGGUCGAGa------AGACGg -5'
3703 5' -55.6 NC_001650.1 + 131627 0.73 0.561893
Target:  5'- uGCUGGCCAcccggcccgaGCUGgCGGC-CgcCUGCCu -3'
miRNA:   3'- -CGACCGGU----------UGACgGUCGaGaaGACGG- -5'
3703 5' -55.6 NC_001650.1 + 130527 0.66 0.935029
Target:  5'- aUUGGUCGAgaGCCGGCUggccCUcUCgGCCa -3'
miRNA:   3'- cGACCGGUUgaCGGUCGA----GA-AGaCGG- -5'
3703 5' -55.6 NC_001650.1 + 123416 0.69 0.80019
Target:  5'- cGCUGuGCCuGCUGaaCGGCUaCUaCUGCCu -3'
miRNA:   3'- -CGAC-CGGuUGACg-GUCGA-GAaGACGG- -5'
3703 5' -55.6 NC_001650.1 + 122091 0.67 0.907302
Target:  5'- cCUGGCCuACUuCCAGCUCacagagaUCUuugGCCa -3'
miRNA:   3'- cGACCGGuUGAcGGUCGAGa------AGA---CGG- -5'
3703 5' -55.6 NC_001650.1 + 118521 0.71 0.714443
Target:  5'- aGCUGGCCAGguagcuCUGCCugAGCc---CUGCCg -3'
miRNA:   3'- -CGACCGGUU------GACGG--UCGagaaGACGG- -5'
3703 5' -55.6 NC_001650.1 + 114422 0.66 0.924656
Target:  5'- cGCggcGGCgGGCuuUGCCuuGGCgggCUUCUGCUu -3'
miRNA:   3'- -CGa--CCGgUUG--ACGG--UCGa--GAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 113351 0.67 0.900405
Target:  5'- aGCUGGCgGGCcccacgauggaguUGCC-GCUCUg--GCCc -3'
miRNA:   3'- -CGACCGgUUG-------------ACGGuCGAGAagaCGG- -5'
3703 5' -55.6 NC_001650.1 + 109458 0.72 0.653691
Target:  5'- uGC-GGCCuggagaGGCUGCUcaGGCUCUUCgugUGCCa -3'
miRNA:   3'- -CGaCCGG------UUGACGG--UCGAGAAG---ACGG- -5'
3703 5' -55.6 NC_001650.1 + 101815 0.75 0.464554
Target:  5'- aGUUGGCgGGCUugGCCAGCUCg---GCCa -3'
miRNA:   3'- -CGACCGgUUGA--CGGUCGAGaagaCGG- -5'
3703 5' -55.6 NC_001650.1 + 100154 0.7 0.753657
Target:  5'- aGCaGGUCAGgUGgucguccaCCAGCUUUUUUGCCa -3'
miRNA:   3'- -CGaCCGGUUgAC--------GGUCGAGAAGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.