Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3710 | 5' | -54.9 | NC_001650.1 | + | 94075 | 1.1 | 0.003778 |
Target: 5'- aGCGUCUCGGACAGGUAGGCCGCAAAGu -3' miRNA: 3'- -CGCAGAGCCUGUCCAUCCGGCGUUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 79705 | 0.75 | 0.579241 |
Target: 5'- uGCGUCUCGGGCgAGcGcGGGCaCGUAGGGc -3' miRNA: 3'- -CGCAGAGCCUG-UC-CaUCCG-GCGUUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 181896 | 0.74 | 0.629789 |
Target: 5'- gGUGUCUgGGggucGCGGGguugAGGCCGCAGc- -3' miRNA: 3'- -CGCAGAgCC----UGUCCa---UCCGGCGUUuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 15189 | 0.74 | 0.629789 |
Target: 5'- gGUGUCUgGGggucGCGGGguugAGGCCGCAGc- -3' miRNA: 3'- -CGCAGAgCC----UGUCCa---UCCGGCGUUuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 80460 | 0.73 | 0.689399 |
Target: 5'- uGCGcUCUCGGACcuGGGggAGGCCgucgcggGCAGGGa -3' miRNA: 3'- -CGC-AGAGCCUG--UCCa-UCCGG-------CGUUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 61598 | 0.73 | 0.690401 |
Target: 5'- -gGUCcagcUGGACgGGGUGGGUCGCGAGGa -3' miRNA: 3'- cgCAGa---GCCUG-UCCAUCCGGCGUUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 48041 | 0.73 | 0.690401 |
Target: 5'- -aGUCcaugCGGGuCGGGgucgAGGCCGCGGGGg -3' miRNA: 3'- cgCAGa---GCCU-GUCCa---UCCGGCGUUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 68837 | 0.72 | 0.710314 |
Target: 5'- gGCGcCUCGGACGGGacguGCCGCGc-- -3' miRNA: 3'- -CGCaGAGCCUGUCCauc-CGGCGUuuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 103850 | 0.72 | 0.739673 |
Target: 5'- gGCGggCUCGGugGGGauggggaaGGGCCGCcuGGg -3' miRNA: 3'- -CGCa-GAGCCugUCCa-------UCCGGCGuuUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 118236 | 0.71 | 0.768202 |
Target: 5'- aGCGcucgggguUCUCGGGCAGcuuGGCCGCcAGGa -3' miRNA: 3'- -CGC--------AGAGCCUGUCcauCCGGCGuUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 91128 | 0.71 | 0.768202 |
Target: 5'- gGCG-CUCGGAgacUGGGUccucccGGCCGCGGGGg -3' miRNA: 3'- -CGCaGAGCCU---GUCCAu-----CCGGCGUUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 42511 | 0.71 | 0.777486 |
Target: 5'- aGUGUgUUUGGGCAGGUGGGCCa----- -3' miRNA: 3'- -CGCA-GAGCCUGUCCAUCCGGcguuuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 114589 | 0.71 | 0.795661 |
Target: 5'- aGC-UCUCGGACAGGUGacggcaggugcuGGCCacCGAGGa -3' miRNA: 3'- -CGcAGAGCCUGUCCAU------------CCGGc-GUUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 160455 | 0.7 | 0.820966 |
Target: 5'- aGCGcccccCUCGGGCGGGUcuccgccccccgcGcGCCGCGAGGa -3' miRNA: 3'- -CGCa----GAGCCUGUCCA-------------UcCGGCGUUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 57879 | 0.69 | 0.846446 |
Target: 5'- cGCGUCaccUgGGGguGGUAGGgCGCGGGa -3' miRNA: 3'- -CGCAG---AgCCUguCCAUCCgGCGUUUc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 37031 | 0.69 | 0.846446 |
Target: 5'- -gGUCUCGGACG---AGGCCGUcAGGa -3' miRNA: 3'- cgCAGAGCCUGUccaUCCGGCGuUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 52165 | 0.69 | 0.853508 |
Target: 5'- cGCGUCggGGACgguguugGGGUAcucGGCCGCGGc- -3' miRNA: 3'- -CGCAGagCCUG-------UCCAU---CCGGCGUUuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 52907 | 0.69 | 0.861923 |
Target: 5'- uGCGUCUCGGGgAGGaAGaGCaGCAGc- -3' miRNA: 3'- -CGCAGAGCCUgUCCaUC-CGgCGUUuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 170222 | 0.69 | 0.869359 |
Target: 5'- gGCGgg-CGGGCAGGUGGGgagaUGCAGGu -3' miRNA: 3'- -CGCagaGCCUGUCCAUCCg---GCGUUUc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 3515 | 0.69 | 0.869359 |
Target: 5'- gGCGgg-CGGGCAGGUGGGgagaUGCAGGu -3' miRNA: 3'- -CGCagaGCCUGUCCAUCCg---GCGUUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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