miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3710 5' -54.9 NC_001650.1 + 41007 0.66 0.961325
Target:  5'- gGUGUCUUGGACGgcGGUcGGUgCGCuGAGu -3'
miRNA:   3'- -CGCAGAGCCUGU--CCAuCCG-GCGuUUC- -5'
3710 5' -54.9 NC_001650.1 + 58379 0.69 0.876586
Target:  5'- aUGgggCUCGGGCAGGcucucggGGGCCGgGGAc -3'
miRNA:   3'- cGCa--GAGCCUGUCCa------UCCGGCgUUUc -5'
3710 5' -54.9 NC_001650.1 + 136863 0.69 0.876586
Target:  5'- cUGUCuaaaaUCGGugAGGUAGGuCCuGCAGAc -3'
miRNA:   3'- cGCAG-----AGCCugUCCAUCC-GG-CGUUUc -5'
3710 5' -54.9 NC_001650.1 + 76827 0.68 0.903306
Target:  5'- aGCGUCgcgagcgagCGGAUAGGgccGCCGCGcAGc -3'
miRNA:   3'- -CGCAGa--------GCCUGUCCaucCGGCGUuUC- -5'
3710 5' -54.9 NC_001650.1 + 30698 0.67 0.934541
Target:  5'- aGCGggagggGGGCGGGagagcgagaggcgGGGCCGCGAGGa -3'
miRNA:   3'- -CGCagag--CCUGUCCa------------UCCGGCGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 23311 0.66 0.949929
Target:  5'- uGCGcCUCGGGCA---GGGUCGCGcAGc -3'
miRNA:   3'- -CGCaGAGCCUGUccaUCCGGCGUuUC- -5'
3710 5' -54.9 NC_001650.1 + 88585 0.66 0.955496
Target:  5'- uGCGUCUCGGACguggacauagugaucAGGacGGCCaGgGGGGu -3'
miRNA:   3'- -CGCAGAGCCUG---------------UCCauCCGG-CgUUUC- -5'
3710 5' -54.9 NC_001650.1 + 35272 0.66 0.957748
Target:  5'- cGCGgg-UGGGCGGGgcGGGCCGgGGAc -3'
miRNA:   3'- -CGCagaGCCUGUCCa-UCCGGCgUUUc -5'
3710 5' -54.9 NC_001650.1 + 66876 0.66 0.957748
Target:  5'- gGCGcCggGGGCGGGggcgagccggGGGCCGgGGAGc -3'
miRNA:   3'- -CGCaGagCCUGUCCa---------UCCGGCgUUUC- -5'
3710 5' -54.9 NC_001650.1 + 62254 0.69 0.876586
Target:  5'- -aGUCUCGGGCGGGcAGccccaCCGCuGAGg -3'
miRNA:   3'- cgCAGAGCCUGUCCaUCc----GGCGuUUC- -5'
3710 5' -54.9 NC_001650.1 + 57879 0.69 0.846446
Target:  5'- cGCGUCaccUgGGGguGGUAGGgCGCGGGa -3'
miRNA:   3'- -CGCAG---AgCCUguCCAUCCgGCGUUUc -5'
3710 5' -54.9 NC_001650.1 + 37031 0.69 0.846446
Target:  5'- -gGUCUCGGACG---AGGCCGUcAGGa -3'
miRNA:   3'- cgCAGAGCCUGUccaUCCGGCGuUUC- -5'
3710 5' -54.9 NC_001650.1 + 15189 0.74 0.629789
Target:  5'- gGUGUCUgGGggucGCGGGguugAGGCCGCAGc- -3'
miRNA:   3'- -CGCAGAgCC----UGUCCa---UCCGGCGUUuc -5'
3710 5' -54.9 NC_001650.1 + 181896 0.74 0.629789
Target:  5'- gGUGUCUgGGggucGCGGGguugAGGCCGCAGc- -3'
miRNA:   3'- -CGCAGAgCC----UGUCCa---UCCGGCGUUuc -5'
3710 5' -54.9 NC_001650.1 + 80460 0.73 0.689399
Target:  5'- uGCGcUCUCGGACcuGGGggAGGCCgucgcggGCAGGGa -3'
miRNA:   3'- -CGC-AGAGCCUG--UCCa-UCCGG-------CGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 68837 0.72 0.710314
Target:  5'- gGCGcCUCGGACGGGacguGCCGCGc-- -3'
miRNA:   3'- -CGCaGAGCCUGUCCauc-CGGCGUuuc -5'
3710 5' -54.9 NC_001650.1 + 91128 0.71 0.768202
Target:  5'- gGCG-CUCGGAgacUGGGUccucccGGCCGCGGGGg -3'
miRNA:   3'- -CGCaGAGCCU---GUCCAu-----CCGGCGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 118236 0.71 0.768202
Target:  5'- aGCGcucgggguUCUCGGGCAGcuuGGCCGCcAGGa -3'
miRNA:   3'- -CGC--------AGAGCCUGUCcauCCGGCGuUUC- -5'
3710 5' -54.9 NC_001650.1 + 42511 0.71 0.777486
Target:  5'- aGUGUgUUUGGGCAGGUGGGCCa----- -3'
miRNA:   3'- -CGCA-GAGCCUGUCCAUCCGGcguuuc -5'
3710 5' -54.9 NC_001650.1 + 114589 0.71 0.795661
Target:  5'- aGC-UCUCGGACAGGUGacggcaggugcuGGCCacCGAGGa -3'
miRNA:   3'- -CGcAGAGCCUGUCCAU------------CCGGc-GUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.