miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3710 5' -54.9 NC_001650.1 + 3515 0.69 0.869359
Target:  5'- gGCGgg-CGGGCAGGUGGGgagaUGCAGGu -3'
miRNA:   3'- -CGCagaGCCUGUCCAUCCg---GCGUUUc -5'
3710 5' -54.9 NC_001650.1 + 15189 0.74 0.629789
Target:  5'- gGUGUCUgGGggucGCGGGguugAGGCCGCAGc- -3'
miRNA:   3'- -CGCAGAgCC----UGUCCa---UCCGGCGUUuc -5'
3710 5' -54.9 NC_001650.1 + 19542 0.69 0.876586
Target:  5'- cGCGagUCGGGgGGGUugAGcGCCGCGGu- -3'
miRNA:   3'- -CGCagAGCCUgUCCA--UC-CGGCGUUuc -5'
3710 5' -54.9 NC_001650.1 + 23311 0.66 0.949929
Target:  5'- uGCGcCUCGGGCA---GGGUCGCGcAGc -3'
miRNA:   3'- -CGCaGAGCCUGUccaUCCGGCGUuUC- -5'
3710 5' -54.9 NC_001650.1 + 27162 0.66 0.961325
Target:  5'- uUGUCaggagggUGGACAGGUucagcaacGGGCUGguGAGg -3'
miRNA:   3'- cGCAGa------GCCUGUCCA--------UCCGGCguUUC- -5'
3710 5' -54.9 NC_001650.1 + 30698 0.67 0.934541
Target:  5'- aGCGggagggGGGCGGGagagcgagaggcgGGGCCGCGAGGa -3'
miRNA:   3'- -CGCagag--CCUGUCCa------------UCCGGCGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 35272 0.66 0.957748
Target:  5'- cGCGgg-UGGGCGGGgcGGGCCGgGGAc -3'
miRNA:   3'- -CGCagaGCCUGUCCa-UCCGGCgUUUc -5'
3710 5' -54.9 NC_001650.1 + 37031 0.69 0.846446
Target:  5'- -gGUCUCGGACG---AGGCCGUcAGGa -3'
miRNA:   3'- cgCAGAGCCUGUccaUCCGGCGuUUC- -5'
3710 5' -54.9 NC_001650.1 + 41007 0.66 0.961325
Target:  5'- gGUGUCUUGGACGgcGGUcGGUgCGCuGAGu -3'
miRNA:   3'- -CGCAGAGCCUGU--CCAuCCG-GCGuUUC- -5'
3710 5' -54.9 NC_001650.1 + 41552 0.68 0.903306
Target:  5'- cGCGgcggCGGAgAGGgaggaggagAGGCCGCAGc- -3'
miRNA:   3'- -CGCaga-GCCUgUCCa--------UCCGGCGUUuc -5'
3710 5' -54.9 NC_001650.1 + 42511 0.71 0.777486
Target:  5'- aGUGUgUUUGGGCAGGUGGGCCa----- -3'
miRNA:   3'- -CGCA-GAGCCUGUCCAUCCGGcguuuc -5'
3710 5' -54.9 NC_001650.1 + 48041 0.73 0.690401
Target:  5'- -aGUCcaugCGGGuCGGGgucgAGGCCGCGGGGg -3'
miRNA:   3'- cgCAGa---GCCU-GUCCa---UCCGGCGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 49878 0.68 0.915302
Target:  5'- gGCGUgUgGGACAcGGaGGGCCcCGGGGg -3'
miRNA:   3'- -CGCAgAgCCUGU-CCaUCCGGcGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 52165 0.69 0.853508
Target:  5'- cGCGUCggGGACgguguugGGGUAcucGGCCGCGGc- -3'
miRNA:   3'- -CGCAGagCCUG-------UCCAU---CCGGCGUUuc -5'
3710 5' -54.9 NC_001650.1 + 52587 0.66 0.95395
Target:  5'- gGCGgccgccagCUCGGGcCGGGU-GGCCaGCAGc- -3'
miRNA:   3'- -CGCa-------GAGCCU-GUCCAuCCGG-CGUUuc -5'
3710 5' -54.9 NC_001650.1 + 52907 0.69 0.861923
Target:  5'- uGCGUCUCGGGgAGGaAGaGCaGCAGc- -3'
miRNA:   3'- -CGCAGAGCCUgUCCaUC-CGgCGUUuc -5'
3710 5' -54.9 NC_001650.1 + 53373 0.68 0.890392
Target:  5'- -gGUCUUGGccucgagcaGCAGGgcGGCCGCc--- -3'
miRNA:   3'- cgCAGAGCC---------UGUCCauCCGGCGuuuc -5'
3710 5' -54.9 NC_001650.1 + 55967 0.66 0.961325
Target:  5'- ---cCUCGGGCAcGGgcccgUAGGCgCGCAGGGc -3'
miRNA:   3'- cgcaGAGCCUGU-CC-----AUCCG-GCGUUUC- -5'
3710 5' -54.9 NC_001650.1 + 56451 0.68 0.890392
Target:  5'- -gGcCUUGGAgGGGUGGGCCGgGc-- -3'
miRNA:   3'- cgCaGAGCCUgUCCAUCCGGCgUuuc -5'
3710 5' -54.9 NC_001650.1 + 57879 0.69 0.846446
Target:  5'- cGCGUCaccUgGGGguGGUAGGgCGCGGGa -3'
miRNA:   3'- -CGCAG---AgCCUguCCAUCCgGCGUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.